1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' |
...gggtatcgatcttgtcgctcatgtgcaataatgcgtcttgtggtcccattcgtgggagcagccagtaatcgagctgggaactttcttgatccctggacagGTCGGCCCTGACATAACCTTCACGATCCTGCTTTCATGGTTAACAGCTTTCGATG
species | Chlamydomonas reinhardtii |
transcript | EDP05749 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: TCGCGATCATCAGTGTCGCGATATCGTTCATCATCATGGCCGCGGACTGG GTCGGCCCTGACATAACCTTCACGATCCTGCTTTCATGGTTAACAGCTTTCEST: gi|10786442|gb|AV643114.1|AV643114
genomic: TCGCGATCATCAGTGTCGCGATATCGTTCATCATCATGGCCGCGGACTGGgttagtgcgc ... ccctggacagGTCGGCCCTGACATAACCTTCACGATCCTGCTTTCATGGTTAACAGCTTTC
EST: TCGCGATCATCAGTGTCGCGATATCGTTCATCATCATGGCCGCGGACTGG GTCGGCCCTGACATAACCTTCACGATCCTGCTTTCATGGTTAACAGCTTTCEST: gi|49469217|gb|BP097078.1|BP097078
genomic: TCGCGATCATCAGTGTCGCGATATCGTTCATCATCATGGCCGCGGACTGGgttagtgcgc ... ccctggacagGTCGGCCCTGACATAACCTTCACGATCCTGCTTTCATGGTTAACAGCTTTC
EST: TCGCGATCATCAGTGTCGCGATATCGTTCATCATCATGGCCGCGGACTGG GTCGGCCCTGACATAACCTTCACGATCCTGCTTTCATGGTTAACAGCTTTC
genomic: TCGCGATCATCAGTGTCGCGATATCGTTCATCATCATGGCCGCGGACTGGgttagtgcgc ... ccctggacagGTCGGCCCTGACATAACCTTCACGATCCTGCTTTCATGGTTAACAGCTTTC
ccattcgtgggagcagccagtaatcgagctgggaactttcttgatccctggacagGTCGGCCCTGACATAACCTTCACGATCCTGCTTTCATGGTTAACAGCTTTCGATG
tcttgat putative branch site (score: 4)
ctttcttgatccct CT-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gggtatcgatcttgtcgctcatgtgcaataatgcgtcttgtggtcccattcgtgggagcagccagtaatcgagctgggaactttcttgatccctggacagGTCGGCCCTGACATAACCTTCACGATCCTGCTTTCATGGTTAACAGCTTTCGATG
- - - - - - - tcgctca
- - - - - - - - - - -tgtgcaa
- - - - - - - - - - - - - - - - - - -ttgtggt