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ATCATCACAGTTGCCAAAGCCGCGGCGGGCTACGGCAACACTGGCCTCCTTACCGTCATCTTTCTGTACTGGGTGGCAGAGGGCGTTACGCAGACCGGAGgtaagacctggattggcgtcgttagctgtggttggggtgccattgctggagcttatggcatgaatgcatgcttgataacttcagctcaacggtggcggcc...
species | Chlamydomonas reinhardtii |
transcript | EDP05749 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: TACCGTCATCTTTCTGTACTGGGTGGCAGAGGGCGTTACGCAGACCGGAG GTCTAGAGCTAGTCATGAACTACGTCCTGGGCCGCTCCCGGTCAGTGCACTEST: gi|10788878|gb|AV626598.1|AV626598
genomic: TACCGTCATCTTTCTGTACTGGGTGGCAGAGGGCGTTACGCAGACCGGAGgtaagacctg ... catcacacagGTCTAGAGCTAGTCATGAACTACGTCCTGGGCCGCTCCCGGTCAGTGCACT
EST: AGAGGGCGTTACGCAGACCGGAG GTCTAGAGCTAGTCATGAACTACGTCCTGGGCCGCTCCCGGTCAGTGCACTEST: gi|10786442|gb|AV643114.1|AV643114
genomic: AGAGGGCGTTACGCAGACCGGAGgtaagacctg ... catcacacagGTCTAGAGCTAGTCATGAACTACGTCCTGGGCCGCTCCCGGTCAGTGCACT
EST: TACCGTCATCTTTCTGTACTGGGTGGCAGAGGGCGTTACGCAGACCGGAG GTCTAGAGCTACTCATGAACTACGTCCTGGGCCGCTCCCGGTCAGTGCCCTEST: gi|49469658|gb|BP097519.1|BP097519
genomic: TACCGTCATCTTTCTGTACTGGGTGGCAGAGGGCGTTACGCAGACCGGAGgtaagacctg ... catcacacagGTCTAGAGCTAGTCATGAACTACGTCCTGGGCCGCTCCCGGTCAGTGCACT
EST: TACCGTCATCTTTCTGTACTGGGTGGCAGAGGGCGTTACGCAGACCGGAG GTCTAGAGCTAGTCATGAACTACGTCCTGGGCCGCTCCCGGTCAGTGCACTEST: gi|49469217|gb|BP097078.1|BP097078
genomic: TACCGTCATCTTTCTGTACTGGGTGGCAGAGGGCGTTACGCAGACCGGAGgtaagacctg ... catcacacagGTCTAGAGCTAGTCATGAACTACGTCCTGGGCCGCTCCCGGTCAGTGCACT
EST: TACCGTCATCTTTCTGTACTGGGTGGCAGAGGGCGTTACGCAGACCGGAG GTCTAGAGCTAGTCATGAACTACGTCCTGGGCCGCTCCCGGTCAGTGCACT
genomic: TACCGTCATCTTTCTGTACTGGGTGGCAGAGGGCGTTACGCAGACCGGAGgtaagacctg ... catcacacagGTCTAGAGCTAGTCATGAACTACGTCCTGGGCCGCTCCCGGTCAGTGCACT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ATCATCACAGTTGCCAAAGCCGCGGCGGGCTACGGCAACACTGGCCTCCTTACCGTCATCTTTCTGTACTGGGTGGCAGAGGGCGTTACGCAGACCGGAGgtaagacctggattggcgtcgttagctgtggttggggtgccattgctggagcttatggcatgaatgcatgcttgataacttcagctcaacggtggcggcc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ttggcgt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgtggtt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gcttatg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgcatgc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aacttca