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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgaggcaccacatttccatgggttccacgttggaaccgccgctgaacaagggtacattcctgctgctgaaccaccacccaatcctttcaacagGTGACCAACTGAAGATTCCAGCCGTTGACATCTCTGTGGCCATCATGCTGGGCGCCTCGGCCGGCTTCATCAATCCCTTCTCCTACCAGACCAACCTGAT

Basic information

species Chlamydomonas reinhardtii
transcript EDP05749
intron # 16
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|15701902|gb|BI726207.1|BI726207
EST:     GACCAACAACGCCGCCGGCGCCATCATGTACCCCATCGCCGCCATTGCAG                         GTGACCAACTGAAGATTCCAGCCGTTGACATCTCTGTGGCCATCATGCTGG
genomic: GACCAACAACGCCGCCGGCGCCATCATGTACCCCATCGCCGCCATTGCAGgtgaggcacc ... ctttcaacagGTGACCAACTGAAGATTCCAGCCGTTGACATCTCTGTGGCCATCATGCTGG
EST: gi|8514474|gb|BE122369.1|BE122369
EST:     GACCAACAACGCCGCCGGCGCCATCATGTACCCCATCGCCGCCATTGCAG                         GTGACCAACTGAAGATTCCAGCCGTTGACATCTCTGTGGCCATCATGCTGG
genomic: GACCAACAACGCCGCCGGCGCCATCATGTACCCCATCGCCGCCATTGCAGgtgaggcacc ... ctttcaacagGTGACCAACTGAAGATTCCAGCCGTTGACATCTCTGTGGCCATCATGCTGG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ccgctgaacaagggtacattcctgctgctgaaccaccacccaatcctttcaacagGTGACCAACTGAAGATTCCAGCCGTTGACATCTCTGTGGCCATCATGCTGGGCGCCTCGGCCGGCTTCATCAATCCCTTCTCCTACCAGACCAACCTGAT
                                           tcctttc  CT-rich tract