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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagcagagataatgttctttcggctgccgcttgagggatggccggggacaggagagtacggcggtagcggggtctcatcaacgtgcccagcttcgagtgcccatgtacatgccaaactagcacgcacggcaacctcttgagttttacgcatggccatggcacactgtggccgtaaatctgaatgccatacatagGTAAAATCATCACAGTTGCCAAAGCCGCGGCGGGCTACGGCAACACTGGCCTCCTTACCGTCATCTTTCTGTACTGGGTGGCAGAGGGCGTTACGCAGAC

Basic information

species Chlamydomonas reinhardtii
transcript EDP05749
intron # 2
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|10788417|gb|AV626137.1|AV626137
EST:     CCCTGACATAACCTTCACGATCCTGCTTTCATGGTTAACAGCTTTCGATG                         GTAAAATCATCACAGTTGCCAAAGCCGCGGCGGGCTACGGCAACACTGGCC
genomic: CCCTGACATAACCTTCACGATCCTGCTTTCATGGTTAACAGCTTTCGATGgtaagcagag ... ccatacatagGTAAAATCATCACAGTTGCCAAAGCCGCGGCGGGCTACGGCAACACTGGCC
EST: gi|10786442|gb|AV643114.1|AV643114
EST:     CCCTGACATAACCTTCACGATCCTGCTTTCATGGTTAACAGCTTTCGATG                         GTAAAATCATCACAGTTGCCAAAGCCGCGGCGGGCTACGGCAACACTGGCC
genomic: CCCTGACATAACCTTCACGATCCTGCTTTCATGGTTAACAGCTTTCGATGgtaagcagag ... ccatacatagGTAAAATCATCACAGTTGCCAAAGCCGCGGCGGGCTACGGCAACACTGGCC
EST: gi|49469217|gb|BP097078.1|BP097078
EST:     CCCTGACATAACCTTCACGATCCTGCTTTCATGGTTAACAGCTTTCGATG                         GTAAAATCATCACAGTTGCCAAAGCCGCGGCGGGCTACGGCAACACTGGCC
genomic: CCCTGACATAACCTTCACGATCCTGCTTTCATGGTTAACAGCTTTCGATGgtaagcagag ... ccatacatagGTAAAATCATCACAGTTGCCAAAGCCGCGGCGGGCTACGGCAACACTGGCC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

agttttacgcatggccatggcacactgtggccgtaaatctgaatgccatacatagGTAAAATCATCACAGTTGCCAAAGCCGCGGCGGGCTACGGCAACACTGGCCTCCTTACCGTCATCTTTCTGTACTGGGTGGCAGAGGGCGTTACGCAGAC
                                 taaatct  TA-rich tract