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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgagggcacgaatttagcacatgccgtccaccaactacgtgcatttgtgctgctgcgtctgcattccaaccgcatccatcccatcggatgtgcccttaaccctatgcagAACAAGGAGGATGAGGCCAAGTTCGGCATGTTTGACATTGCGCCGTACGGAGTGCCGTACGCGCTCATGGGCTTTGTCTTCATCATCCTAACGCAACGGT

Basic information

species Chlamydomonas reinhardtii
transcript EDP05749
intron # 5
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|10788878|gb|AV626598.1|AV626598
EST:     CCACCAACCTGGTCATCGTGGGCATGCAAGACACGCGTTACAACAAGCAG                         AACAAGGAGGATGAGGCCAAGTTCGGCATGTTTGACATTGCGCCGTACGGA
genomic: CCACCAACCTGGTCATCGTGGGCATGCAAGACACGCGTTACAACAAGCAGgtgagggcac ... ccctatgcagAACAAGGAGGATGAGGCCAAGTTCGGCATGTTTGACATTGCGCCGTACGGA
EST: gi|49469658|gb|BP097519.1|BP097519
EST:     CCACCAACCTGGTCATCGTGGGCATGCAAGACACGCGTTACAACAAGCAG                         AACAAGGAGGATGAGGCCAAGTTCGGCATGTTTGACATTGCGCCGTACGGA
genomic: CCACCAACCTGGTCATCGTGGGCATGCAAGACACGCGTTACAACAAGCAGgtgagggcac ... ccctatgcagAACAAGGAGGATGAGGCCAAGTTCGGCATGTTTGACATTGCGCCGTACGGA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gcgtctgcattccaaccgcatccatcccatcggatgtgcccttaaccctatgcagAACAAGGAGGATGAGGCCAAGTTCGGCATGTTTGACATTGCGCCGTACGGAGTGCCGTACGCGCTCATGGGCTTTGTCTTCATCATCCTAACGCAACGGT
                                       ccttaac  putative branch site (score: 3)