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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgaggacacgtttgcgagccccacccacgtgccccacggttggctgctgagtgcgggcatgttggcagtgacgcatgcgtgtgtacggtatgcctggaccgcctggcacagcgctgactaatgactgctaccccttggcttttcgcagCCGGTCTTCGTGGAGTGCCCGGCCTGTTCGTGCTGTCCGTGGACCGCGCTGACGGCAGCAGTGTGGACGCCTCTGACTACCTGTACAAAATCCAGCCC

Basic information

species Chlamydomonas reinhardtii
transcript EDP05749
intron # 11
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|16435979|gb|BM001199.1|BM001199
EST:     GTCAAGGTCAAGAAGAACTCGGAAGTAGTGAACAAAACGGTCACCGCCG                         CCGGTCTTCGTGGAGTGCCCGGCCTGTTCGTGCTGTCCGTGGACCGCGCTG
genomic: GTCAAGGTCAAGAAGAACTCGGAAGTAGTGAACAAAACGGTCACCGCCGgtgaggacac ... cttttcgcagCCGGTCTTCGTGGAGTGCCCGGCCTGTTCGTGCTGTCCGTGGACCGCGCTG
EST: gi|15703310|gb|BI727615.1|BI727615
EST:     GTCAAGGTCAAGAAGAACTCGGAAGTAGTGAACAAAACGGTCACCGCCG                         CCGGTCTTCGTGGAGTGCCCGGCCTGTTCGTGCTGTCCGTGGACCGCGCTG
genomic: GTCAAGGTCAAGAAGAACTCGGAAGTAGTGAACAAAACGGTCACCGCCGgtgaggacac ... cttttcgcagCCGGTCTTCGTGGAGTGCCCGGCCTGTTCGTGCTGTCCGTGGACCGCGCTG
EST: gi|161792905|gb|FC082159.1|FC082159
EST:     CGTCAAGGTCAAGAAGAACTCGGAAGTAGTGAACAAAACGGTCACCGCCG                         CTGGTCTTCGTGGAGTGCCCGGCCTGTTCGTGCTGTCCGTGGACCGCGCTG
genomic: CGTCAAGGTCAAGAAGAACTCGGAAGTAGTGAACAAAACGGTCACCGCCGgtgaggacac ... cttttcgcagCCGGTCTTCGTGGAGTGCCCGGCCTGTTCGTGCTGTCCGTGGACCGCGCTG
EST: gi|10791918|gb|AV629284.1|AV629284
EST:     CGTCAAGGTCAAGAAGAACTCGGAAGTAGTGAACAAAACGGTCACCGCCG                         CCGGTCTTCGTGGAGTGCCCGGCCTGTTCGTGCTGTCCGTGGACCGCGCTG
genomic: CGTCAAGGTCAAGAAGAACTCGGAAGTAGTGAACAAAACGGTCACCGCCGgtgaggacac ... cttttcgcagCCGGTCTTCGTGGAGTGCCCGGCCTGTTCGTGCTGTCCGTGGACCGCGCTG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ctggaccgcctggcacagcgctgactaatgactgctaccccttggcttttcgcagCCGGTCTTCGTGGAGTGCCCGGCCTGTTCGTGCTGTCCGTGGACCGCGCTGACGGCAGCAGTGTGGACGCCTCTGACTACCTGTACAAAATCCAGCCC
                      gactaat  putative branch site (score: 2)
                                     ccccttggcttttc  putative PPT