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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CCGGTCTTCGTGGAGTGCCCGGCCTGTTCGTGCTGTCCGTGGACCGCGCTGACGGCAGCAGTGTGGACGCCTCTGACTACCTGTACAAAATCCAGCCCgtgagtgctggtaactgccggtgttggttccggctcccgggcgccataccacattccttgcatttgctcgcatatgctcacccgatgattaacgggtgccatcagtatttgttcttagcacctgctaattgccttgttgcacag

Basic information

species Chlamydomonas reinhardtii
transcript EDP05749
intron # 12
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|16435979|gb|BM001199.1|BM001199
EST:     CTGACGGCAGCAGTGTGGACGCCTCTGACTACCTGTACAAAATCCAGCCC                         GGTGACACCCTTTGGCTGGCGGCGGACGTGGGCGCCGTGGGCTTCCTGTCT
genomic: CTGACGGCAGCAGTGTGGACGCCTCTGACTACCTGTACAAAATCCAGCCCgtgagtgctg ... tgttgcacagGGTGACACCCTTTGGCTGGCGGCGGACGTGGGCGCCGTGGGCTTCCTGTCT
EST: gi|15703310|gb|BI727615.1|BI727615
EST:     CTGACGGCAGCAGTGTGGACGCCTCTGACTACCTGTACAAAATCCAGCCC                         GGTGACACCCTTTGGCTGGCGGCGGACGTGGGCGCCGTGGGCTTCCTGTCT
genomic: CTGACGGCAGCAGTGTGGACGCCTCTGACTACCTGTACAAAATCCAGCCCgtgagtgctg ... tgttgcacagGGTGACACCCTTTGGCTGGCGGCGGACGTGGGCGCCGTGGGCTTCCTGTCT
EST: gi|10791918|gb|AV629284.1|AV629284
EST:     CTGACGGCAGCAGTGTGGACGCCTCTGACTACCTGTACAAAATCCAGCCC                         GGTGACACCCTTTGGCTGGCGGCGGACGTGGGCGCCGTGGGCTTCCTGTCT
genomic: CTGACGGCAGCAGTGTGGACGCCTCTGACTACCTGTACAAAATCCAGCCCgtgagtgctg ... tgttgcacagGGTGACACCCTTTGGCTGGCGGCGGACGTGGGCGCCGTGGGCTTCCTGTCT