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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagtgacacggcctgggaacaacatattcaaagctgccctacattacggcagcagacgaacggccgatgcaggcaacctccggcggggtcatttgggaagccctgccagggagggggctaggctcgatgtaccgtacagaaagcgctgttgatccagttctctgctcatccttgctcccctgcagTCCTGATGTCCTGGGCTCGGCGCTGCGGCGTGCCGCCTAAGAAGCTGCTCATTCCGCTGTCGTACGCGGCCGTGCTGGGTGGCACATGCACTTCCATCGG

Basic information

species Chlamydomonas reinhardtii
transcript EDP05749
intron # 4
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|10792637|gb|AV630003.1|AV630003
EST:     CTTGTCCGCGTTCCTGAACAACACCCCGTGCGTCACCTTCATGATCCCCA                         TCCTGATGTCCTGGGCTCGGCGCTGCGGCGTGCCGCCTAAGAAGCTGCTCA
genomic: CTTGTCCGCGTTCCTGAACAACACCCCGTGCGTCACCTTCATGATCCCCAgtaagtgaca ... tcccctgcagTCCTGATGTCCTGGGCTCGGCGCTGCGGCGTGCCGCCTAAGAAGCTGCTCA
EST: gi|10788878|gb|AV626598.1|AV626598
EST:     CTTGTCCGCGTTCCTGAACAACACCCCGTGCGTCACCTTCATGATCCCCA                         TCCTGATGTCCTGGGCTCGGCGCTGCGGCGTGCCGCCTAAGAAGCTGCTCA
genomic: CTTGTCCGCGTTCCTGAACAACACCCCGTGCGTCACCTTCATGATCCCCAgtaagtgaca ... tcccctgcagTCCTGATGTCCTGGGCTCGGCGCTGCGGCGTGCCGCCTAAGAAGCTGCTCA
EST: gi|10786442|gb|AV643114.1|AV643114
EST:     TCGTCCGCGCTTC-TGAACAACACCCCGTGCGTCACCTTCATGATCCCCA                         TCCTGATGTCCTGGGCTCGGCGCTGCGGCGTGC-GTCTAAGAAGCTGCTCA
genomic: TTGTCCGCG-TTCCTGAACAACACCCCGTGCGTCACCTTCATGATCCCCAgtaagtgaca ... tcccctgcagTCCTGATGTCCTGGGCTCGGCGCTGCGGCGTGCCGCCTAAGAAGCTGCTCA
EST: gi|49469658|gb|BP097519.1|BP097519
EST:     CTTGTCCGCGTTCCTGAACAACACCCCGTGCGTCACCTTCATGATCCCCA                         TCCTGATGTCCTGGGCTCGGCGCTGCGGCGTGCCGCCTAAGAAGCTGCTCA
genomic: CTTGTCCGCGTTCCTGAACAACACCCCGTGCGTCACCTTCATGATCCCCAgtaagtgaca ... tcccctgcagTCCTGATGTCCTGGGCTCGGCGCTGCGGCGTGCCGCCTAAGAAGCTGCTCA
EST: gi|49469217|gb|BP097078.1|BP097078
EST:     CTTGTCCGCGTTCCTGAACAACACCCCGTGCGTCACCTTCATGATCCCCA                         TCCTGATGTCCTGGGCTCGGCGCTGCGGCGTGCCGCCTAAGAAGCTGCTCA
genomic: CTTGTCCGCGTTCCTGAACAACACCCCGTGCGTCACCTTCATGATCCCCAgtaagtgaca ... tcccctgcagTCCTGATGTCCTGGGCTCGGCGCTGCGGCGTGCCGCCTAAGAAGCTGCTCA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

accgtacagaaagcgctgttgatccagttctctgctcatccttgctcccctgcagTCCTGATGTCCTGGGCTCGGCGCTGCGGCGTGCCGCCTAAGAAGCTGCTCATTCCGCTGTCGTACGCGGCCGTGCTGGGTGGCACATGCACTTCCATCGG
                tgttgat  putative branch site (score: 4)
                           ttctctgctcatcctt  putative PPT