1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' |
...tggtacgcgtattatacgtgtcattctattgatgactgcatgcaccgcacgtttcctgcgaccctgcccatgctgcctgcttgccttactcctgccacagCCCCTCACTTCGACGAAGCACGCGACGACTTCAAGATCAACTTTGAGAAGCTGAGATTCGTGAAGGACGGCGCCGCCAAGGAGTTTGTGATTGGCGTCAA
species | Chlamydomonas reinhardtii |
transcript | EDP05749 |
intron # | 10 |
splice site | 3' |
intron type | U2 |
EST: CCTGAACGACGTGGTGCTGGCCGCCGGCGACGTGCTCATCCTGGACACCA CCCCTCACTTCGACGAGGCACGCGACGACTTCAAGATCAACTTTGAGAAGCEST: gi|10791918|gb|AV629284.1|AV629284
genomic: CCTGAACGATGTGGTGCTGGCCGCCGGCGACGTGCTCATCCTGGACACCAgtgagtagct ... cctgccacagCCCCTCACTTCGACGAAGCACGCGACGACTTCAAGATCAACTTTGAGAAGC
EST: CCTGAACGATGTGGTGCTGGCCGCCGGCGACGTGCTCATCCTGGACACCA CCCCTCACTTCGACGAAGCACGCGACGACTTCAAGATCAACTTTGAGAAGC
genomic: CCTGAACGATGTGGTGCTGGCCGCCGGCGACGTGCTCATCCTGGACACCAgtgagtagct ... cctgccacagCCCCTCACTTCGACGAAGCACGCGACGACTTCAAGATCAACTTTGAGAAGC
cgcacgtttcctgcgaccctgcccatgctgcctgcttgccttactcctgccacagCCCCTCACTTCGACGAAGCACGCGACGACTTCAAGATCAACTTTGAGAAGCTGAGATTCGTGAAGGACGGCGCCGCCAAGGAGTTTGTGATTGGCGTCAA
gccttac putative branch site (score: 3)
cttgccttactcct CT-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tggtacgcgtattatacgtgtcattctattgatgactgcatgcaccgcacgtttcctgcgaccctgcccatgctgcctgcttgccttactcctgccacagCCCCTCACTTCGACGAAGCACGCGACGACTTCAAGATCAACTTTGAGAAGCTGAGATTCGTGAAGGACGGCGCCGCCAAGGAGTTTGTGATTGGCGTCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG
- - acgcgta
- - - - - - - tacgtgt
- - - - - - - - - - - - - - - - - - -gcatgca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - cccatgc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ctgcttg