1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' |
TGGTCTTACCAAGCGATGGTGCACGAGCTGATCGGAATCCACGATAACACCGTCAAGCTGACCAGCGGCAAGgtgcgctctgcgggaggggcgggaagggttccagcagggacaaagcgtaaggccaccgcccagggcccgtcccttcaagagcaggcgcgctggtcgcgccctcaccccgaccacggctgcgttgtgtctgcctcgtcatgcag
species | Chlamydomonas reinhardtii |
transcript | EDO98462 |
intron # | 7 |
splice site | 5' |
intron type | U2 |
EST: ACGAGCTGATCGGAATCCACGATAACACCGTCAAGCTGACCAGCGGCAAG GTGGCGGAGCAGTTCCGCGATGTGGTGTTCGATCCGCGTCAGGATGACTTCEST: gi|15702604|gb|BI726909.1|BI726909
genomic: ACGAGCTGATCGGAATCCACGATAACACCGTCAAGCTGACCAGCGGCAAGgtgcgctctg ... cgtcatgcagGTGGCGGAGCAGTTCCGCGATGTGGTGTTCGATCCGCGTCAGGATGACTTC
EST: ACGAGCTGATCGGAATCCACGATAACACCGTCAAGCTGACCAGCGGCAAG GTGGCGGAGCAGTTCCGCGATGTGGTGTTCGATCCGCGTCAGGATGACTTCEST: gi|15693809|gb|BI718114.1|BI718114
genomic: ACGAGCTGATCGGAATCCACGATAACACCGTCAAGCTGACCAGCGGCAAGgtgcgctctg ... cgtcatgcagGTGGCGGAGCAGTTCCGCGATGTGGTGTTCGATCCGCGTCAGGATGACTTC
EST: ACGAGCTGATCGGAATCCACGATAACACCGTCAAGCTGACCAGCGGCAAG GTGGCGGAGCAGTTCCGCGATGTGGTGTTCGATCCGCGTCAGGATGACTTCEST: gi|15702699|gb|BI727004.1|BI727004
genomic: ACGAGCTGATCGGAATCCACGATAACACCGTCAAGCTGACCAGCGGCAAGgtgcgctctg ... cgtcatgcagGTGGCGGAGCAGTTCCGCGATGTGGTGTTCGATCCGCGTCAGGATGACTTC
EST: ACGAGCTGATCGGAATCCACGATAACACCGTCAAGCTGACCAGCGGCAAG GTGGCGGAGCAGTTCCGCGATGTGGTGTTCGATCCGCGTCAGGATGACTTCEST: gi|16430457|gb|BI995683.1|BI995683
genomic: ACGAGCTGATCGGAATCCACGATAACACCGTCAAGCTGACCAGCGGCAAGgtgcgctctg ... cgtcatgcagGTGGCGGAGCAGTTCCGCGATGTGGTGTTCGATCCGCGTCAGGATGACTTC
EST: ACGAGCTGATCGGAATCCACGATAACACCGTCAAGCTGACCAGCGGCAAG GTGGCGGAGCAGTTCCGCGATGTGGTGTTCGATCCGCGTCAGGATGACTTCEST: gi|15704256|gb|BI728561.1|BI728561
genomic: ACGAGCTGATCGGAATCCACGATAACACCGTCAAGCTGACCAGCGGCAAGgtgcgctctg ... cgtcatgcagGTGGCGGAGCAGTTCCGCGATGTGGTGTTCGATCCGCGTCAGGATGACTTC
EST: ACGAGCTGATCGGAATCCACGATAACACCGTCAAGCTGACCAGCGGCAAG GTGGCGGAGCAGTTCCGCGATGTGGTGTTCGATCCGCGTCAGGATGACTTCEST: gi|15695620|gb|BI719925.1|BI719925
genomic: ACGAGCTGATCGGAATCCACGATAACACCGTCAAGCTGACCAGCGGCAAGgtgcgctctg ... cgtcatgcagGTGGCGGAGCAGTTCCGCGATGTGGTGTTCGATCCGCGTCAGGATGACTTC
EST: ACGAGCTGATCGGAATCCACGATAACACCGTCAAGCTGACCAGCGGCAAG GTGGCGGGAGCAGTTCCGCGATGTGGTGTTCGATCCGCGTEST: gi|16436829|gb|BM002049.1|BM002049
genomic: ACGAGCTGATCGGAATCCACGATAACACCGTCAAGCTGACCAGCGGCAAGgtgcgctctg ... cgtcatgcagGTGGCGG-AGCAGTTCCGCGATGTGGTGTTCGATCCGCGT
EST: ACGAGCTGATCGGAATCCACGATAACACCGTCAAGCTGACCAGCGGCAAG GTGGCGGAGCAGTTCCGCGATGTGGTGTTCGATCCGCGTCAGGATGACTTC
genomic: ACGAGCTGATCGGAATCCACGATAACACCGTCAAGCTGACCAGCGGCAAGgtgcgctctg ... cgtcatgcagGTGGCGGAGCAGTTCCGCGATGTGGTGTTCGATCCGCGTCAGGATGACTTC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TGGTCTTACCAAGCGATGGTGCACGAGCTGATCGGAATCCACGATAACACCGTCAAGCTGACCAGCGGCAAGgtgcgctctgcgggaggggcgggaagggttccagcagggacaaagcgtaaggccaccgcccagggcccgtcccttcaagagcaggcgcgctggtcgcgccctcaccccgaccacggctgcgttgtgtctgcctcgtcatgcag
- - - - - - - - - - - - AGCTGA
- - - - - - - - - - - - - GCTGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - CAAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGA