1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' |
...caatgaacggtgcatatgggaccgactccgttgggacaggtcacggcacagcaagccatgcctcgaaaagtacctgtgccttcgctcggaccgcacgcagACTTCACAAACCTGCTGAGCTCCGTCAGCACTGTGTTTCTGCAAGACCTGGCTGAGGCGGATGCGGCCAAGGAGAGCGTTCTGGAAGTGCAG
species | Chlamydomonas reinhardtii |
transcript | EDO98462 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: GCTGCTGAAGAAGGAGCTGCGGGCGCCCCGCTACCAGAGCTACAACCTGC ACTTCACAAACCTGCTGAGCTCCGTCAGCACTGTGTTTCTGCAAGACCTGGEST: gi|14232473|gb|BG851289.1|BG851289
genomic: GCTGCTGAAGAAGGAGCTGCGGGCGCCCCGCTACCAGAGCTACAACCTGCgtgagtttgc ... ccgcacgcagACTTCACAAACCTGCTGAGCTCCGTCAGCACTGTGTTTCTGCAAGACCTGG
EST: GCTGCTGAAGAAGGAGCTGCGGGCGCCCCGCTACCAGAGCTACAACCTGC ACTTCACAAACCTGCTGAGCTCCGTCAGCACTGTGTTTCTGCAAGACCTGGEST: gi|10788812|gb|AV626532.1|AV626532
genomic: GCTGCTGAAGAAGGAGCTGCGGGCGCCCCGCTACCAGAGCTACAACCTGCgtgagtttgc ... ccgcacgcagACTTCACAAACCTGCTGAGCTCCGTCAGCACTGTGTTTCTGCAAGACCTGG
EST: GCTGCTGAAGAAGGAGCTGCGGGCGCCCCGCTACCAGAGCTACAACCTGC ACTTCACAAACCTGCTGAGCTCCGTCAGCACTGTGTTTCTGCAAGACCTGGEST: gi|10794444|gb|AV631810.1|AV631810
genomic: GCTGCTGAAGAAGGAGCTGCGGGCGCCCCGCTACCAGAGCTACAACCTGCgtgagtttgc ... ccgcacgcagACTTCACAAACCTGCTGAGCTCCGTCAGCACTGTGTTTCTGCAAGACCTGG
EST: GCTGCTGAAGAAGGAGCTGCGGGCGCCCCGCTACCAGAGCTACAACCTGC ACTTCACAAACCTGCTGAGCTCEST: gi|15695620|gb|BI719925.1|BI719925
genomic: GCTGCTGAAGAAGGAGCTGCGGGCGCCCCGCTACCAGAGCTACAACCTGCgtgagtttgc ... ccgcacgcagACTTCACAAACCTGCTGAGCTC
EST: GCTGCTGAAGAAGGAGCTGCGGGCGCCCCGCTACCAGAGCTACAACCTGC ACTTCACAAACCTGCTGAGCTCCGTCAGCACTGTGTTTCTGCAAGACCTGGEST: gi|16437436|gb|BM002656.1|BM002656
genomic: GCTGCTGAAGAAGGAGCTGCGGGCGCCCCGCTACCAGAGCTACAACCTGCgtgagtttgc ... ccgcacgcagACTTCACAAACCTGCTGAGCTCCGTCAGCACTGTGTTTCTGCAAGACCTGG
EST: GCTGCTGAAGAAGGAGCTGCGGGCGCCCCGCTACCAGAGCTACAACCTGC ACTTCACAAACCTGCTGAGCTCCGTCAGCACTGTGTTTCTGCAAGACCTGGEST: gi|15694523|gb|BI718828.1|BI718828
genomic: GCTGCTGAAGAAGGAGCTGCGGGCGCCCCGCTACCAGAGCTACAACCTGCgtgagtttgc ... ccgcacgcagACTTCACAAACCTGCTGAGCTCCGTCAGCACTGTGTTTCTGCAAGACCTGG
EST: GCTGCTGAAGAAGGAGCTGCGGGCGCCCCGCTACCAGAGCTACAACCTGC ACTTCACAAACCTGCTGAGCTCCGTCAGCACTGTGTTTCTGCAAGACCTGGEST: gi|161821274|gb|FC109465.1|FC109465
genomic: GCTGCTGAAGAAGGAGCTGCGGGCGCCCCGCTACCAGAGCTACAACCTGCgtgagtttgc ... ccgcacgcagACTTCACAAACCTGCTGAGCTCCGTCAGCACTGTGTTTCTGCAAGACCTGG
EST: GCTGCTGAAGAAGGAGCTGCGGGCGCCCCGCTACCAGAGCTACAACCTGC ACTTCACAAACCTGCTGAGCTCCGTCAGCACTGTGTTTCTGCAAGACCTGG
genomic: GCTGCTGAAGAAGGAGCTGCGGGCGCCCCGCTACCAGAGCTACAACCTGCgtgagtttgc ... ccgcacgcagACTTCACAAACCTGCTGAGCTCCGTCAGCACTGTGTTTCTGCAAGACCTGG
gcacagcaagccatgcctcgaaaagtacctgtgccttcgctcggaccgcacgcagACTTCACAAACCTGCTGAGCTCCGTCAGCACTGTGTTTCTGCAAGACCTGGCTGAGGCGGATGCGGCCAAGGAGAGCGTTCTGGAAGTGCAG
aaaagta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| caatgaacggtgcatatgggaccgactccgttgggacaggtcacggcacagcaagccatgcctcgaaaagtacctgtgccttcgctcggaccgcacgcagACTTCACAAACCTGCTGAGCTCCGTCAGCACTGTGTTTCTGCAAGACCTGGCTGAGGCGGATGCGGCCAAGGAGAGCGTTCTGGAAGTGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG
- atgaacg
- - - - - tgcatat
- - - - - - - - - - accgact
- - - - - - - - - - - - - - - - - - - - - - - -acagcaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - catgcct