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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaggcctgcagacatgcccttgcctgcaacgcatgcctgacggcagcagtaagcgcgcatgacacagttcgatgttctgcgccactgaataatactgtgacaacatcgcactaagttgtacatgaacatgcagGTCCGGGAGTACCCGCGGGCGCGAGCCCCAGTGGCGGCCAGCTGCCCACGCCTCGGGTCGTGTTAGGCGGAACCGGCATCCTCAACTCGCAG

Basic information

species Chlamydomonas reinhardtii
transcript EDO98462
intron # 15
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|7615812|gb|AW721252.1|AW721252
EST:     CAAGGCGGTGGCGGAGATGAACGACCGCGCAAACGCCGCCGCGAATGCGG                         GTCCGGGAGTACCCGCGGGCGCGAGCCCCAGTGGCGGCCAGCTGCCCACGC
genomic: CAAGGCGGTGGCGGAGATGAACGACCGCGCAAACGCCGCCGCGAATGCGGgtaggcctgc ... gaacatgcagGTCCGGGAGTACCCGCGGGCGCGAGCCCCAGTGGCGGCCAGCTGCCCACGC
EST: gi|23364004|gb|BU651824.1|BU651824
EST:     CAAGGCGGTGGCGGAGATGAACGACCGCGCAAACGCCGCCGCGAATGCGG                         GTCCGGGAGTACCCGCGGGCGCGAGCCCCAGTGGCGGCCAGCTGCCCACGC
genomic: CAAGGCGGTGGCGGAGATGAACGACCGCGCAAACGCCGCCGCGAATGCGGgtaggcctgc ... gaacatgcagGTCCGGGAGTACCCGCGGGCGCGAGCCCCAGTGGCGGCCAGCTGCCCACGC
EST: gi|14231208|gb|BG850024.1|BG850024
EST:     CAAGGCGGTGGCGGAGATGAACGACCGCGCAAACGCCGCCGCGAATGCGG                         GTCCGGGAGTACCCGCGGGCGCGAGCCCCAGTGGCGGCCAGCTGCCCACGC
genomic: CAAGGCGGTGGCGGAGATGAACGACCGCGCAAACGCCGCCGCGAATGCGGgtaggcctgc ... gaacatgcagGTCCGGGAGTACCCGCGGGCGCGAGCCCCAGTGGCGGCCAGCTGCCCACGC
EST: gi|16433769|gb|BI998995.1|BI998995
EST:     CAAGGCGGTGGCGGAGATGAACGACCGCGCAAACGCCGCCGCGAATGCGG                         GTCCGGGAGTACCCGCGGGCGCGAGCCCCAGTGGCGGCCAGCTGCCCACGC
genomic: CAAGGCGGTGGCGGAGATGAACGACCGCGCAAACGCCGCCGCGAATGCGGgtaggcctgc ... gaacatgcagGTCCGGGAGTACCCGCGGGCGCGAGCCCCAGTGGCGGCCAGCTGCCCACGC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gcgccactgaataatactgtgacaacatcgcactaagttgtacatgaacatgcagGTCCGGGAGTACCCGCGGGCGCGAGCCCCAGTGGCGGCCAGCTGCCCACGCCTCGGGTCGTGTTAGGCGGAACCGGCATCCTCAACTCGCAG
       tgaataata  TA-rich tract