1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' |
...tgacttacaatgtgggctggacaagacagaacgtgtcggtatcaccacatgctgacatgcgttagcggatgttgatgaaggtgcccacgcctgcgcatagGGAGCCCCGGCTGTATGCGGCTGTGGAGGCGGTGCTGCGGTACGGCGGCGCGTCACGGCGCGCTGGTGACCTGTACGGCAGCCGCAACCTGCTGTCCAAG
species | Chlamydomonas reinhardtii |
transcript | EDO98462 |
intron # | 12 |
splice site | 3' |
intron type | U2 |
EST: CGGGTGCGGCAGATGCTGGACTACCTGGCCACTGCGGGCGTGCGGGAGCG ----CCCCGGCTGTATGCGGCTGTGGAGGCGGTGCTGCGGTEST: gi|15702604|gb|BI726909.1|BI726909
genomic: CGGGTGCGGCAGATGCTGGACTACCTGGCCACTGCGGGCGTGCGGGAGCGgtgaggcgtc ... ctgcgcatagGGAGCCCCGGCTGTATGCGGCTGTGGAGGCGGTGCTGCGGT
EST: CGGGTGCGGCAGATGCTGGACTACCTGGCCACTGCGGGCGTGCGGGAGCG GGAGCCCCGGCTGTATGCGGCTGTGGAGGCGGTGCEST: gi|9027660|gb|BE237700.1|BE237700
genomic: CGGGTGCGGCAGATGCTGGACTACCTGGCCACTGCGGGCGTGCGGGAGCGgtgaggcgtc ... ctgcgcatagGGAGCCCCGGCTGTATGCGGCTGTGGAGGCGGTGC
EST: CGGGTGCGGCAGATGCTGGACTACCTGGCCACTGCGGGCGTGCGGGAGCG GGAGCCCCGGCTGTATGCGGCTGTGGAGGCGGTGCTGCGGTACGGCGGCGC
genomic: CGGGTGCGGCAGATGCTGGACTACCTGGCCACTGCGGGCGTGCGGGAGCGgtgaggcgtc ... ctgcgcatagGGAGCCCCGGCTGTATGCGGCTGTGGAGGCGGTGCTGCGGTACGGCGGCGC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tgacttacaatgtgggctggacaagacagaacgtgtcggtatcaccacatgctgacatgcgttagcggatgttgatgaaggtgcccacgcctgcgcatagGGAGCCCCGGCTGTATGCGGCTGTGGAGGCGGTGCTGCGGTACGGCGGCGCGTCACGGCGCGCTGGTGACCTGTACGGCAGCCGCAACCTGCTGTCCAAG
- acttaca
- - - - -atgtggg
- - - - - - - - - - - -agacaga
- - - - - - - - - - - - - - - - - - - - - - - acatgct
- - - - - - - - - - - - - - - - - - - - - - - - - - - acatgcg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgttgat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gcccacg