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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTCGGACCGGCTGGACCCGCTGGCCTACCCCTACATGGCGTCCACAGGGGACGAGGTGGCCACGCTCACGGCCAACGCCAAGCGGGCGCCGCCGCGCGAGgtttgtgggacgacttgacacgcccaccgtatgttggtcgtctacataaaatgaattgatcttagcgtaatgatggcggaatttgtttgatcacctttct...

Basic information

species Chlamydomonas reinhardtii
transcript EDO98462
intron # 14
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|9027660|gb|BE237700.1|BE237700
EST:     ACGAGGTGGCCACGCTCACGGNCAACGCCAAGCGGGCGCCGCCGCGCGAG                         GTCATCGTNGT-CGTGCTGGGCGGCACCACGTAC
genomic: ACGAGGTGGCCACGCTCACGGCCAACGCCAAGCGGGCGCCGCCGCGCGAGgtttgtggga ... tcgcccgcagGTCATCGT-GTTCGTGCTGGGCGGCACCACGTAC
EST: gi|7615812|gb|AW721252.1|AW721252
EST:     CAACGCCAAGCGGGCGCCGCCGCGCGAG                         GTCATCGTGTTCGTGCTGGGCGGCACCACGTACGAGGAGGCCAAGGCGGTG
genomic: CAACGCCAAGCGGGCGCCGCCGCGCGAGgtttgtggga ... tcgcccgcagGTCATCGTGTTCGTGCTGGGCGGCACCACGTACGAGGAGGCCAAGGCGGTG
EST: gi|14231208|gb|BG850024.1|BG850024
EST:     ACGAGGTGGCCACGCTCACGGCCAACGCCAAGCGGGCGCCGCCGCGCGAG                         GTCATCGTGTTCGTGCTGGGCGGCACCACGTACGAGGAGGCCAAGGCGGTG
genomic: ACGAGGTGGCCACGCTCACGGCCAACGCCAAGCGGGCGCCGCCGCGCGAGgtttgtggga ... tcgcccgcagGTCATCGTGTTCGTGCTGGGCGGCACCACGTACGAGGAGGCCAAGGCGGTG
EST: gi|16433769|gb|BI998995.1|BI998995
EST:     ACGAGGTGGCCACGCTCACGGCCAACGCCAAGCGGGCGCCGCCGCGCGAG                         GTCATCGTGTTCGTGCTGGGCGGCACCACGTACGAGGAGGCCAAGGCGGTG
genomic: ACGAGGTGGCCACGCTCACGGCCAACGCCAAGCGGGCGCCGCCGCGCGAGgtttgtggga ... tcgcccgcagGTCATCGTGTTCGTGCTGGGCGGCACCACGTACGAGGAGGCCAAGGCGGTG

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
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---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GTCGGACCGGCTGGACCCGCTGGCCTACCCCTACATGGCGTCCACAGGGGACGAGGTGGCCACGCTCACGGCCAACGCCAAGCGGGCGCCGCCGCGCGAGgtttgtgggacgacttgacacgcccaccgtatgttggtcgtctacataaaatgaattgatcttagcgtaatgatggcggaatttgtttgatcacctttct

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -acacgcc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgttggt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -acataaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ttagcgt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tttgttt