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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGCAACGTGTCCAAGCACGTCAACCTTATGACGCAGCTGAGCGAGACCGTGTCGGGGCGCAACCTGATGGACGTGTCCAGCgtgagtgcgagtgggggcatgacactgcggcgccgtgtgggcaccaagtacccgtgctccgtgtcaacggactgacctcttgtgtatccttagacgctttgcattgcgttgtcactgacatgcatgctccattggcaaaaatctcatcaatgacgcacag

Basic information

species Chlamydomonas reinhardtii
transcript EDO98462
intron # 10
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|23364005|gb|BU651825.1|BU651825
EST:     CGCAGCTGAGCGAGACCGTGTCGGGGCGCAACCTGATGGACGTGTCCAGC                         GCGGAGCAGGAGCTAGCGAACCCGGCGGCAAGCCTCACGTCGGCGGCTTCG
genomic: CGCAGCTGAGCGAGACCGTGTCGGGGCGCAACCTGATGGACGTGTCCAGCgtgagtgcga ... tgacgcacagGCGGAGCAGGAGCTAGCGAACCCGGCGGCAAGCCTCACGTCGGCGGCTTCG
EST: gi|15702604|gb|BI726909.1|BI726909
EST:     CGCAGCTGAGCGAGACCGTGTCGGGGCGCAACCTGATGGACGTGTCCAGC                         GCGGAGCAGGAGCTAGCGAACCCGGCGGCAAGCCTCACGTCGGCGGCTTCG
genomic: CGCAGCTGAGCGAGACCGTGTCGGGGCGCAACCTGATGGACGTGTCCAGCgtgagtgcga ... tgacgcacagGCGGAGCAGGAGCTAGCGAACCCGGCGGCAAGCCTCACGTCGGCGGCTTCG
EST: gi|9027660|gb|BE237700.1|BE237700
EST:     GGGGCGCAACCTGATGGACGTGTCCAGC                         GCGGAGCAGGAGCTAGCGAACCCGGCGGCAAGCCTCACGTCGGCGGCTTCG
genomic: GGGGCGCAACCTGATGGACGTGTCCAGCgtgagtgcga ... tgacgcacagGCGGAGCAGGAGCTAGCGAACCCGGCGGCAAGCCTCACGTCGGCGGCTTCG
EST: gi|15693809|gb|BI718114.1|BI718114
EST:     CGCAGCTGAGCGAGACCGTGTCGGGGCGCAACCTGATGGACGTGTCCAGC                         GCGGAGCAGGAGCTAGCGAACCCGGCGGCAAGCCTCACGTCGGCGGCTTCG
genomic: CGCAGCTGAGCGAGACCGTGTCGGGGCGCAACCTGATGGACGTGTCCAGCgtgagtgcga ... tgacgcacagGCGGAGCAGGAGCTAGCGAACCCGGCGGCAAGCCTCACGTCGGCGGCTTCG
EST: gi|7615811|gb|AW721251.1|AW721251
EST:     CGCAGCTGAGCGAGACCGTGTCGGGGCGCAACCTGATGGACGTGTCCAGC                         GCGGAGCAGGAGCTAGCGAACCCGGCGGTAAGCCTCACGTCGGCGGGTTGG
genomic: CGCAGCTGAGCGAGACCGTGTCGGGGCGCAACCTGATGGACGTGTCCAGCgtgagtgcga ... tgacgcacagGCGGAGCAGGAGCTAGCGAACCCGGCGGCAAGCCTCACGTCGGCGGCTTCG
EST: gi|15704256|gb|BI728561.1|BI728561
EST:     CGCAGCTGAGCGAGACCGTGTCGGGGCGCAACCTGATGGACGTGTCCAGC                         GCGGAGCAGGAGCTAGCGAACCCGGCGGCAAGCCTCACGTCGGCGGCTTCG
genomic: CGCAGCTGAGCGAGACCGTGTCGGGGCGCAACCTGATGGACGTGTCCAGCgtgagtgcga ... tgacgcacagGCGGAGCAGGAGCTAGCGAACCCGGCGGCAAGCCTCACGTCGGCGGCTTCG
EST: gi|16436829|gb|BM002049.1|BM002049
EST:     CGCAGCTGAGCGAGACCGTGTCGGGGCGCAACCTGATGGACGTGTCCAGC                         GCGGAGCAGGAGCTAGCGAACCCGGCGGCAAGCCTCACGTCGGCGGCTTCG
genomic: CGCAGCTGAGCGAGACCGTGTCGGGGCGCAACCTGATGGACGTGTCCAGCgtgagtgcga ... tgacgcacagGCGGAGCAGGAGCTAGCGAACCCGGCGGCAAGCCTCACGTCGGCGGCTTCG

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GGCAACGTGTCCAAGCACGTCAACCTTATGACGCAGCTGAGCGAGACCGTGTCGGGGCGCAACCTGATGGACGTGTCCAGCgtgagtgcgagtgggggcatgacactgcggcgccgtgtgggcaccaagtacccgtgctccgtgtcaacggactgacctcttgtgtatccttagacgctttgcattgcgttgtcactgacatgcatgctccattggcaaaaatctcatcaatgacgcacag

- - - - - - - - - - - - - - - - GCAGCT
- - - - - - - - - - - - - - - -  CAGCTG
- - - - - - - - - - - - - - - - - AGCTGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GATGGA