1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' |
gtgcgcagaccagcacatttccatgacatgggccatgacatttgagaccgctgcaacctgagtcccacaacatgcaacggctgattgtttccatgccgccctggccggttgctatgcagATGTTCCTGTCGGCGCTCACGTCAGGACTCAACATTCCGCAATCAGCACAAGGAGCGGGTGTCACGAGCAGCGGCTCAGGAGGGTCCTTTGAGCGTTCAA
species | Chlamydomonas reinhardtii |
transcript | EDO98462 |
intron # | 16 |
splice site | 3' |
intron type | U2 |
EST: TGCCCACGCCTCGGGTCGTGTTAGGCGGAACCGGCATCCTCAACTCGCAG ATGTTCCTGTCGGCGCTCACGTCAGGACTCAACATTCCGCAATCAGCACAAEST: gi|23364004|gb|BU651824.1|BU651824
genomic: TGCCCACGCCTCGGGTCGTGTTAGGCGGAACCGGCATCCTCAACTCGCAGgtgcgcagac ... tgctatgcagATGTTCCTGTCGGCGCTCACGTCAGGACTCAACATTCCGCAATCAGCACAA
EST: TGCCCACGCCTCGGGTCGTGTTAGGCGGAACCGGCATCCTCAACTCGCAG ATGTTCCTGTCGGCGCTCACGTCAGGACTCAACATTCCGCAATCAGCACAAEST: gi|16430699|gb|BI995925.1|BI995925
genomic: TGCCCACGCCTCGGGTCGTGTTAGGCGGAACCGGCATCCTCAACTCGCAGgtgcgcagac ... tgctatgcagATGTTCCTGTCGGCGCTCACGTCAGGACTCAACATTCCGCAATCAGCACAA
EST: AACCGGCATCCTCAACTCGCAG ATGTTCCTGTCGGCGCTCACGTCAGGACTCAACATTCCGCAATCAGCACAAEST: gi|14231208|gb|BG850024.1|BG850024
genomic: AACCGGCATCCTCAACTCGCAGgtgcgcagac ... tgctatgcagATGTTCCTGTCGGCGCTCACGTCAGGACTCAACATTCCGCAATCAGCACAA
EST: TGCCCACGCCTCGGGTCGTGTTAGGCGGAACCGGCATCCTCAACTCGCAG ATGTTCCTGTCGGCGCTCACGTCAGGACTCAACATTCCGCAATCAGCCCAAEST: gi|16433769|gb|BI998995.1|BI998995
genomic: TGCCCACGCCTCGGGTCGTGTTAGGCGGAACCGGCATCCTCAACTCGCAGgtgcgcagac ... tgctatgcagATGTTCCTGTCGGCGCTCACGTCAGGACTCAACATTCCGCAATCAGCACAA
EST: TGCCCACGCCTCGGGTCGTGTTAGGCGGAACCGGCATCCTCAACTCGCAG ATGTTCCTGTCGGCGCTCACGTCAGGACTCAACATTCCGCAATCAGCACAA
genomic: TGCCCACGCCTCGGGTCGTGTTAGGCGGAACCGGCATCCTCAACTCGCAGgtgcgcagac ... tgctatgcagATGTTCCTGTCGGCGCTCACGTCAGGACTCAACATTCCGCAATCAGCACAA
ccacaacatgcaacggctgattgtttccatgccgccctggccggttgctatgcagATGTTCCTGTCGGCGCTCACGTCAGGACTCAACATTCCGCAATCAGCACAAGGAGCGGGTGTCACGAGCAGCGGCTCAGGAGGGTCCTTTGAGCGTTCAA
ggctgat putative branch site (score: 4)
attgttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgcgcagaccagcacatttccatgacatgggccatgacatttgagaccgctgcaacctgagtcccacaacatgcaacggctgattgtttccatgccgccctggccggttgctatgcagATGTTCCTGTCGGCGCTCACGTCAGGACTCAACATTCCGCAATCAGCACAAGGAGCGGGTGTCACGAGCAGCGGCTCAGGAGGGTCCTTTGAGCGTTCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCAG