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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCAGTCTGCTTCCTGCGGCCAACCAAAGAGAACATCGCGCTGCTGAAGAAGGAGCTGCGGGCGCCCCGCTACCAGAGCTACAACCTGCgtgagtttgctggcagggcgtacgggaacctggcgcacctggcggcgtgctggttcccgcgtgtgcatggaggggcgtagctgtccatgaaagttggaag...

Basic information

species Chlamydomonas reinhardtii
transcript EDO98462
intron # 2
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|161812844|gb|FC095631.1|FC095631
EST:     GCTGCTGAAGAAGGAGCTGCGGGCGCCCCGCTACCAGAGCTACAACCTGC                         ACTTCACAAACCTGCTGAGCTCCGTCAGCACTGTGTTTCTGCAAGACCTGG
genomic: GCTGCTGAAGAAGGAGCTGCGGGCGCCCCGCTACCAGAGCTACAACCTGCgtgagtttgc ... ccgcacgcagACTTCACAAACCTGCTGAGCTCCGTCAGCACTGTGTTTCTGCAAGACCTGG
EST: gi|14232473|gb|BG851289.1|BG851289
EST:     GCTGCTGAAGAAGGAGCTGCGGGCGCCCCGCTACCAGAGCTACAACCTGC                         ACTTCACAAACCTGCTGAGCTCCGTCAGCACTGTGTTTCTGCAAGACCTGG
genomic: GCTGCTGAAGAAGGAGCTGCGGGCGCCCCGCTACCAGAGCTACAACCTGCgtgagtttgc ... ccgcacgcagACTTCACAAACCTGCTGAGCTCCGTCAGCACTGTGTTTCTGCAAGACCTGG
EST: gi|10788812|gb|AV626532.1|AV626532
EST:     GCTGCTGAAGAAGGAGCTGCGGGCGCCCCGCTACCAGAGCTACAACCTGC                         ACTTCACAAACCTGCTGAGCTCCGTCAGCACTGTGTTTCTGCAAGACCTGG
genomic: GCTGCTGAAGAAGGAGCTGCGGGCGCCCCGCTACCAGAGCTACAACCTGCgtgagtttgc ... ccgcacgcagACTTCACAAACCTGCTGAGCTCCGTCAGCACTGTGTTTCTGCAAGACCTGG
EST: gi|10794444|gb|AV631810.1|AV631810
EST:     GCTGCTGAAGAAGGAGCTGCGGGCGCCCCGCTACCAGAGCTACAACCTGC                         ACTTCACAAACCTGCTGAGCTC
genomic: GCTGCTGAAGAAGGAGCTGCGGGCGCCCCGCTACCAGAGCTACAACCTGCgtgagtttgc ... ccgcacgcagACTTCACAAACCTGCTGAGCTC
EST: gi|15695620|gb|BI719925.1|BI719925
EST:     GCTGCTGAAGAAGGAGCTGCGGGCGCCCCGCTACCAGAGCTACAACCTGC                         ACTTCACAAACCTGCTGAGCTCCGTCAGCACTGTGTTTCTGCAAGACCTGG
genomic: GCTGCTGAAGAAGGAGCTGCGGGCGCCCCGCTACCAGAGCTACAACCTGCgtgagtttgc ... ccgcacgcagACTTCACAAACCTGCTGAGCTCCGTCAGCACTGTGTTTCTGCAAGACCTGG
EST: gi|16437436|gb|BM002656.1|BM002656
EST:     GCTGCTGAAGAAGGAGCTGCGGGCGCCCCGCTACCAGAGCTACAACCTGC                         ACTTCACAAACCTGCTGAGCTCCGTCAGCACTGTGTTTCTGCAAGACCTGG
genomic: GCTGCTGAAGAAGGAGCTGCGGGCGCCCCGCTACCAGAGCTACAACCTGCgtgagtttgc ... ccgcacgcagACTTCACAAACCTGCTGAGCTCCGTCAGCACTGTGTTTCTGCAAGACCTGG
EST: gi|15694523|gb|BI718828.1|BI718828
EST:     GCTGCTGAAGAAGGAGCTGCGGGCGCCCCGCTACCAGAGCTACAACCTGC                         ACTTCACAAACCTGCTGAGCTCCGTCAGCACTGTGTTTCTGCAAGACCTGG
genomic: GCTGCTGAAGAAGGAGCTGCGGGCGCCCCGCTACCAGAGCTACAACCTGCgtgagtttgc ... ccgcacgcagACTTCACAAACCTGCTGAGCTCCGTCAGCACTGTGTTTCTGCAAGACCTGG
EST: gi|161821274|gb|FC109465.1|FC109465
EST:     GCTGCTGAAGAAGGAGCTGCGGGCGCCCCGCTACCAGAGCTACAACCTGC                         ACTTCACAAACCTGCTGAGCTCCGTCAGCACTGTGTTTCTGCAAGACCTGG
genomic: GCTGCTGAAGAAGGAGCTGCGGGCGCCCCGCTACCAGAGCTACAACCTGCgtgagtttgc ... ccgcacgcagACTTCACAAACCTGCTGAGCTCCGTCAGCACTGTGTTTCTGCAAGACCTGG

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GCAGTCTGCTTCCTGCGGCCAACCAAAGAGAACATCGCGCTGCTGAAGAAGGAGCTGCGGGCGCCCCGCTACCAGAGCTACAACCTGCgtgagtttgctggcagggcgtacgggaacctggcgcacctggcggcgtgctggttcccgcgtgtgcatggaggggcgtagctgtccatgaaagttggaag

- - - - - - - - - - - - - - - - - - - GCTGCT
- - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - -  TGAAGA
- - - - - - - - - - - - - - - - - - - - - -  AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - AAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgctggt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgtgcat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgtccat