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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTCCGGGAGTACCCGCGGGCGCGAGCCCCAGTGGCGGCCAGCTGCCCACGCCTCGGGTCGTGTTAGGCGGAACCGGCATCCTCAACTCGCAGgtgcgcagaccagcacatttccatgacatgggccatgacatttgagaccgctgcaacctgagtcccacaacatgcaacggctgattgtttccatgccgccctggccggttgctatgcag

Basic information

species Chlamydomonas reinhardtii
transcript EDO98462
intron # 16
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|7615812|gb|AW721252.1|AW721252
EST:     TGCCCACGCCTCGGGTCGTGTTAGGCGGAACCGGCATCCTCAACTCGCAG                         ATGTTCCTGTCGGCGCTCACGTCAGGACTCAACATTCCGCAATCAGCACAA
genomic: TGCCCACGCCTCGGGTCGTGTTAGGCGGAACCGGCATCCTCAACTCGCAGgtgcgcagac ... tgctatgcagATGTTCCTGTCGGCGCTCACGTCAGGACTCAACATTCCGCAATCAGCACAA
EST: gi|23364004|gb|BU651824.1|BU651824
EST:     TGCCCACGCCTCGGGTCGTGTTAGGCGGAACCGGCATCCTCAACTCGCAG                         ATGTTCCTGTCGGCGCTCACGTCAGGACTCAACATTCCGCAATCAGCACAA
genomic: TGCCCACGCCTCGGGTCGTGTTAGGCGGAACCGGCATCCTCAACTCGCAGgtgcgcagac ... tgctatgcagATGTTCCTGTCGGCGCTCACGTCAGGACTCAACATTCCGCAATCAGCACAA
EST: gi|16430699|gb|BI995925.1|BI995925
EST:     AACCGGCATCCTCAACTCGCAG                         ATGTTCCTGTCGGCGCTCACGTCAGGACTCAACATTCCGCAATCAGCACAA
genomic: AACCGGCATCCTCAACTCGCAGgtgcgcagac ... tgctatgcagATGTTCCTGTCGGCGCTCACGTCAGGACTCAACATTCCGCAATCAGCACAA
EST: gi|14231208|gb|BG850024.1|BG850024
EST:     TGCCCACGCCTCGGGTCGTGTTAGGCGGAACCGGCATCCTCAACTCGCAG                         ATGTTCCTGTCGGCGCTCACGTCAGGACTCAACATTCCGCAATCAGCCCAA
genomic: TGCCCACGCCTCGGGTCGTGTTAGGCGGAACCGGCATCCTCAACTCGCAGgtgcgcagac ... tgctatgcagATGTTCCTGTCGGCGCTCACGTCAGGACTCAACATTCCGCAATCAGCACAA
EST: gi|16433769|gb|BI998995.1|BI998995
EST:     TGCCCACGCCTCGGGTCGTGTTAGGCGGAACCGGCATCCTCAACTCGCAG                         ATGTTCCTGTCGGCGCTCACGTCAGGACTCAACATTCCGCAATCAGCACAA
genomic: TGCCCACGCCTCGGGTCGTGTTAGGCGGAACCGGCATCCTCAACTCGCAGgtgcgcagac ... tgctatgcagATGTTCCTGTCGGCGCTCACGTCAGGACTCAACATTCCGCAATCAGCACAA