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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTTCCTGGCGCTGCGCCGGCGACCCGTAATCCGCTACCAGCGGGGGAGCGAGCTGGTTGCGAAGTTGGCGGAGAGCCTGCACAGACTCACGTACAAGCAGgtgcgagaagactgtgtacgggtgttagctgttggcttcgggcgcaaattcattgcacgggggctttgttaatgggcaacaagcacagcaaggacttgcacctgtctggtggcacgcccgcgaatgccctgcacttgagtgctctccttgacgtgcag

Basic information

species Chlamydomonas reinhardtii
transcript EDO98462
intron # 5
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|15702699|gb|BI727004.1|BI727004
EST:     AGCTGGTTGCGAAGTTGGCGGAGAGCCTGCACAGACTCACGTACAAGCAG                         GAGGCGGCGGTGTTTGACTTTGGCGCCTCACGGTCGGCGCCGCCTGTGGTG
genomic: AGCTGGTTGCGAAGTTGGCGGAGAGCCTGCACAGACTCACGTACAAGCAGgtgcgagaag ... tgacgtgcagGAGGCGGCGGTGTTTGACTTTGGCGCCTCACGGTCGGCGCCGCCTGTGGTG
EST: gi|16430457|gb|BI995683.1|BI995683
EST:     AGCTGGTTGCGAAGTTGGCGGAGAGCCTGCACAGACTCACGTACAAGCAG                         GAGGCGGCGGTGTTTGACTTTGGCGCCTCACGGTCGGCGCCGCCTGTGGTG
genomic: AGCTGGTTGCGAAGTTGGCGGAGAGCCTGCACAGACTCACGTACAAGCAGgtgcgagaag ... tgacgtgcagGAGGCGGCGGTGTTTGACTTTGGCGCCTCACGGTCGGCGCCGCCTGTGGTG
EST: gi|15694323|gb|BI718628.1|BI718628
EST:     AGCTGGATGCGAAGTTGGCGGAGAGCCTGCACAGACTCACGTACAAGCAG                         GAGGCGGCGGTGTTTGACTTTGGCGCCTTACGGTCGGTGCCGTCTGTGGTG
genomic: AGCTGGTTGCGAAGTTGGCGGAGAGCCTGCACAGACTCACGTACAAGCAGgtgcgagaag ... tgacgtgcagGAGGCGGCGGTGTTTGACTTTGGCGCCTCACGGTCGGCGCCGCCTGTGGTG
EST: gi|15695620|gb|BI719925.1|BI719925
EST:     AGCTGGTTGCGAAGTTGGCGGAGAGCCTGCACAGACTCACGTACAAGCAG                         GAGGCGGCGGTGTTTGACTTTGGCGCCTCACGGTCGGCGCCGCCTGTGGTG
genomic: AGCTGGTTGCGAAGTTGGCGGAGAGCCTGCACAGACTCACGTACAAGCAGgtgcgagaag ... tgacgtgcagGAGGCGGCGGTGTTTGACTTTGGCGCCTCACGGTCGGCGCCGCCTGTGGTG