1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' |
CGATGAGCACAAGGGCCGCATCGCCATCGGCCGCGTCAGCAGCGGCACCATCAAGCGTGGCCAGACCATCTCGATCTGCTCCTCGCTGGAGCCCGGCAAGgtgcgttggaagccagcaccggaagggcacttatcaggccacattgcaaccttcgatctgggcggaatcgcaaagatgttgtttgccctaaccgcatgccttgcgttccccaatccattttggcccgcag
species | Chlamydomonas reinhardtii |
transcript | EDO98397 |
intron # | 9 |
splice site | 5' |
intron type | U2 |
EST: TCAAGCGTGGCCAGACCATCTCGATCTGCTCCTCGCTGGAGCCCGGCAAG GTGCGCCAGGCCAAGATCGCTGAGCTGTTCGTGTACGACAACTTCAGCCGCEST: gi|10784235|gb|AV640907.1|AV640907
genomic: TCAAGCGTGGCCAGACCATCTCGATCTGCTCCTCGCTGGAGCCCGGCAAGgtgcgttgga ... tggcccgcagGTGCGCCAGGCCAAGATCGCTGAGCTGTTCGTGTACGACAACTTCAGCCGC
EST: TCAAGCGTGGCCAGACCATCTCGATCTGCTCCTCGCTGGAGCCCGGCAAG GTGCGCCAGGCCAAGATCGCTGAGCTGTTCGTGTACGACAACTTCAGCCGCEST: gi|49462475|gb|BP090388.1|BP090388
genomic: TCAAGCGTGGCCAGACCATCTCGATCTGCTCCTCGCTGGAGCCCGGCAAGgtgcgttgga ... tggcccgcagGTGCGCCAGGCCAAGATCGCTGAGCTGTTCGTGTACGACAACTTCAGCCGC
EST: TCAAGCGTGGCCAGACCATCTCGATCTGCTCCTCGCTGGAGCCCGGCAAG GTGCGCCAGGCCAAGATCGCTGAGCTGTTCGTGTACGACAACTTCAGCCGCEST: gi|34988709|gb|CF562626.1|CF562626
genomic: TCAAGCGTGGCCAGACCATCTCGATCTGCTCCTCGCTGGAGCCCGGCAAGgtgcgttgga ... tggcccgcagGTGCGCCAGGCCAAGATCGCTGAGCTGTTCGTGTACGACAACTTCAGCCGC
EST: TCAAGCGTGGCCAGACCATCTCGATCTGCTCCTCGCTGGAGCCCGGCAAG GTGCGCCAGGCCAAGATCGCTGAGCTGTTCGTGTACGACAACTTCAGCCGCEST: gi|34985800|gb|CF559717.1|CF559717
genomic: TCAAGCGTGGCCAGACCATCTCGATCTGCTCCTCGCTGGAGCCCGGCAAGgtgcgttgga ... tggcccgcagGTGCGCCAGGCCAAGATCGCTGAGCTGTTCGTGTACGACAACTTCAGCCGC
EST: TCAAGCGTGGCCAGACCATCTCGATCTGCTCCTCGCTGGAGCCCGGCAAG GTGCGCCAGGCCAAGATCGCTGAGCTGTTCGTGTACGACAACTTCAGCCGCEST: gi|34990038|gb|CF563955.1|CF563955
genomic: TCAAGCGTGGCCAGACCATCTCGATCTGCTCCTCGCTGGAGCCCGGCAAGgtgcgttgga ... tggcccgcagGTGCGCCAGGCCAAGATCGCTGAGCTGTTCGTGTACGACAACTTCAGCCGC
EST: TCAAGCGTGGCCAGACCATCTCGATCTGCTCCTCGCTGGAGCCCGGCAAG GTGCGCCAGGCCAAGATCGCTGAGCTGTTCGTGTACGACAACTTCAGCCGCEST: gi|34987972|gb|CF561889.1|CF561889
genomic: TCAAGCGTGGCCAGACCATCTCGATCTGCTCCTCGCTGGAGCCCGGCAAGgtgcgttgga ... tggcccgcagGTGCGCCAGGCCAAGATCGCTGAGCTGTTCGTGTACGACAACTTCAGCCGC
EST: TCAAGCGTGGCCAGACCATCTCGATCTGCTCCTCGCTGGAGCCCGGCAAG GTGCGCCAGGCCAAGATCGCTGAGCTGTTCGTGTACGACAACTTCTA-CCGEST: gi|34983512|gb|CF557429.1|CF557429
genomic: TCAAGCGTGGCCAGACCATCTCGATCTGCTCCTCGCTGGAGCCCGGCAAGgtgcgttgga ... tggcccgcagGTGCGCCAGGCCAAGATCGCTGAGCTGTTCGTGTACGACAACTTC-AGCCG
EST: TCAAGCGTGGCCAGACCATCTCGATCTGCTCCTCGCTGGAGCCCGGCAAG GTGCGCCAGGCCAAGATCGCTGAGCTGTTCGTGTACGACAACTTCAGTCGCEST: gi|14239935|gb|BG858751.1|BG858751
genomic: TCAAGCGTGGCCAGACCATCTCGATCTGCTCCTCGCTGGAGCCCGGCAAGgtgcgttgga ... tggcccgcagGTGCGCCAGGCCAAGATCGCTGAGCTGTTCGTGTACGACAACTTCAGCCGC
EST: TCAAGCGTGGCCAGACCATCTCGATCTGCTCCTCGCTGGAGCCCGGCAAG GTGCGCCAGGCCAAGATCGCTGAGCTGTTCGTGTACGACAACTTCAGCCGCEST: gi|34983932|gb|CF557849.1|CF557849
genomic: TCAAGCGTGGCCAGACCATCTCGATCTGCTCCTCGCTGGAGCCCGGCAAGgtgcgttgga ... tggcccgcagGTGCGCCAGGCCAAGATCGCTGAGCTGTTCGTGTACGACAACTTCAGCCGC
EST: CAAGCGTGGCCAGACCATCTCGATCTGCTCCTCGCT-GATGCCCGGCAAG GTGCGCCAGGCCAAGATCGCTGAGCTGTTCGTGTACGACAACTTCAGCCGCEST: gi|10775954|gb|AV632634.1|AV632634
genomic: CAAGCGTGGCCAGACCATCTCGATCTGCTCCTCGCTGGA-GCCCGGCAAGgtgcgttgga ... tggcccgcagGTGCGCCAGGCCAAGATCGCTGAGCTGTTCGTGTACGACAACTTCAGCCGC
EST: CAAGCGTGGCCAGACCATCTCGATCTGCTCCTCGCTGGAGCCCGGCAAG GTGCGCCAGGCCAAGATCGCTGAGCTGTTCGTGTACGACAACTTCAGCCGCEST: gi|34986185|gb|CF560102.1|CF560102
genomic: CAAGCGTGGCCAGACCATCTCGATCTGCTCCTCGCTGGAGCCCGGCAAGgtgcgttgga ... tggcccgcagGTGCGCCAGGCCAAGATCGCTGAGCTGTTCGTGTACGACAACTTCAGCCGC
EST: TCAAGCGTGGCCAGACCATCTCGATCTGCTCCTCGCTGGAGCCCGGCAAG GTGCGCCAGGCCAAGATCGCTGAGCTGTTCGTGTACGACAACTTCAGCCGCEST: gi|49458891|gb|BP086804.1|BP086804
genomic: TCAAGCGTGGCCAGACCATCTCGATCTGCTCCTCGCTGGAGCCCGGCAAGgtgcgttgga ... tggcccgcagGTGCGCCAGGCCAAGATCGCTGAGCTGTTCGTGTACGACAACTTCAGCCGC
EST: TCAAGCGTGGCCAGACCATCTCGATCTGCTCCTCGCTGGAGCCCGGCAAG GTGCGCCAGGCCAAGATCGCTGAGCTGTTCGTGTACGACAACTTCAGCCGCEST: gi|10779636|gb|AV636316.1|AV636316
genomic: TCAAGCGTGGCCAGACCATCTCGATCTGCTCCTCGCTGGAGCCCGGCAAGgtgcgttgga ... tggcccgcagGTGCGCCAGGCCAAGATCGCTGAGCTGTTCGTGTACGACAACTTCAGCCGC
EST: TCAAGCGTGGCCAGACCATCTCGATCTGCTCCTCGCTGGAGCCCGGCAAG GTGCGCCAGGCCAAGATCGCTGAGCTGTTCGTGTACGACAACTTCAGCCGCEST: gi|34991853|gb|CF565770.1|CF565770
genomic: TCAAGCGTGGCCAGACCATCTCGATCTGCTCCTCGCTGGAGCCCGGCAAGgtgcgttgga ... tggcccgcagGTGCGCCAGGCCAAGATCGCTGAGCTGTTCGTGTACGACAACTTCAGCCGC
EST: TCAAGCGTGGCCAGACCATCTCGATCTGCTCCTCGCTGGAGCCCGGCAAG GTGCGCCAGGCCAAGATCGCTGAGCTGTTCGTGTACGACAACTTCAGCCGCEST: gi|22075814|gb|BQ824590.1|BQ824590
genomic: TCAAGCGTGGCCAGACCATCTCGATCTGCTCCTCGCTGGAGCCCGGCAAGgtgcgttgga ... tggcccgcagGTGCGCCAGGCCAAGATCGCTGAGCTGTTCGTGTACGACAACTTCAGCCGC
EST: TCAAGCGTGGCCAGACCATCTCGATCTGCTCCTCGCTGGAGCCCGGCAAG GTGCGCCAGGCCAAGATCGCTGAGCTGTTCGTGTACGACAACTTCAGCCGCEST: gi|7686797|gb|AW757445.1|AW757445
genomic: TCAAGCGTGGCCAGACCATCTCGATCTGCTCCTCGCTGGAGCCCGGCAAGgtgcgttgga ... tggcccgcagGTGCGCCAGGCCAAGATCGCTGAGCTGTTCGTGTACGACAACTTCAGCCGC
EST: TCAAGCGTGGCCAGACCATCTCGATCTGCTCCTCGCTGGAGCCCGGCAAG GTGCGCCAGGCCAAGATCGCTGAGCTGTTCGTGTACGACAACTTCAGCCGCEST: gi|10125782|gb|BE724486.1|BE724486
genomic: TCAAGCGTGGCCAGACCATCTCGATCTGCTCCTCGCTGGAGCCCGGCAAGgtgcgttgga ... tggcccgcagGTGCGCCAGGCCAAGATCGCTGAGCTGTTCGTGTACGACAACTTCAGCCGC
EST: TCAAGCGTGGCCAGACCATCTCGATCTGCTCCTCGCTGGAGCCCGGCAAG GTGCGCCAGGCCAAGATCGCTGAGCTGTTCGTGTACGACAACTTCAGCCGCEST: gi|10785257|gb|AV641929.1|AV641929
genomic: TCAAGCGTGGCCAGACCATCTCGATCTGCTCCTCGCTGGAGCCCGGCAAGgtgcgttgga ... tggcccgcagGTGCGCCAGGCCAAGATCGCTGAGCTGTTCGTGTACGACAACTTCAGCCGC
EST: TCAAGCGTGGCCAGACCATCTCGATCTGCTCCTCGCTGGAGCCCGGCAAG GTGCGCCAGGCCAAGATCGCTGAGCTGTTCGTGTACGACAACTTCAGCEST: gi|34990037|gb|CF563954.1|CF563954
genomic: TCAAGCGTGGCCAGACCATCTCGATCTGCTCCTCGCTGGAGCCCGGCAAGgtgcgttgga ... tggcccgcagGTGCGCCAGGCCAAGATCGCTGAGCTGTTCGTGTACGACAACTTCAGC
EST: TCAAGCGTGGCCAGACCATCTCGATCTGCTCCTCGCTGGAGCCCGGCAAG GTGCGCCAGGCCAAGATCGCTGAGCTGTTCGTGTACGACAACTTCAGCCGCEST: gi|34983933|gb|CF557850.1|CF557850
genomic: TCAAGCGTGGCCAGACCATCTCGATCTGCTCCTCGCTGGAGCCCGGCAAGgtgcgttgga ... tggcccgcagGTGCGCCAGGCCAAGATCGCTGAGCTGTTCGTGTACGACAACTTCAGCCGC
EST: TCAAGCGTGGCCAGACCATCTCGATCTGCTCCTCGCTGGAGCCCGGCAAG GTGCGCCAGGCCAAGATCGCTGAGCTGTTCGTGTACGACAACTTCAGCCGCEST: gi|34990036|gb|CF563953.1|CF563953
genomic: TCAAGCGTGGCCAGACCATCTCGATCTGCTCCTCGCTGGAGCCCGGCAAGgtgcgttgga ... tggcccgcagGTGCGCCAGGCCAAGATCGCTGAGCTGTTCGTGTACGACAACTTCAGCCGC
EST: TCAAGCGTGGCCAGACCATCTCGATCTGCTCCTCGCTGGAGCCCGGCAAG GGGCGCCAGGCCAAGATCGCTGAGCTGTTCGTGTAGGACAAC-TCAAGCCGEST: gi|34985817|gb|CF559734.1|CF559734
genomic: TCAAGCGTGGCCAGACCATCTCGATCTGCTCCTCGCTGGAGCCCGGCAAGgtgcgttgga ... tggcccgcagGTGCGCCAGGCCAAGATCGCTGAGCTGTTCGTGTACGACAACTTC-AGCCG
EST: TCAAGCGTGGCCAGACCATCTCGATCTGCTCCTCGCTGGAGCCCGGCAAG GTGCGCCAGGCCAAGATCGCTGAGCTGTTCGTGTACGACAACTTCAGCCGCEST: gi|34981930|gb|CF555847.1|CF555847
genomic: TCAAGCGTGGCCAGACCATCTCGATCTGCTCCTCGCTGGAGCCCGGCAAGgtgcgttgga ... tggcccgcagGTGCGCCAGGCCAAGATCGCTGAGCTGTTCGTGTACGACAACTTCAGCCGC
EST: TGGAGCCCGGCAAG GTGCGCCAGGCCAAGATCGCTGAGCTGTTCGTGTACGACAACTTCAGCCGCEST: gi|34985799|gb|CF559716.1|CF559716
genomic: TGGAGCCCGGCAAGgtgcgttgga ... tggcccgcagGTGCGCCAGGCCAAGATCGCTGAGCTGTTCGTGTACGACAACTTCAGCCGC
EST: TCAAGCGTGGCCAGACCATCTCGATCTGCTCCTCGCTGGAGCCCGGCAAG GTGCGCCAGGCCAAGATCGCTGAGCTGTTCGTGTACGACAACTTCAGCCGCEST: gi|34984373|gb|CF558290.1|CF558290
genomic: TCAAGCGTGGCCAGACCATCTCGATCTGCTCCTCGCTGGAGCCCGGCAAGgtgcgttgga ... tggcccgcagGTGCGCCAGGCCAAGATCGCTGAGCTGTTCGTGTACGACAACTTCAGCCGC
EST: TCAAGCGTGGCCAGACCATCTCGATCTGCTCCTCGCTGGAGCCCGGCAAG GTGCGCCAGGCCAAGATCGCTGAGCTGTTCGTGTACGACAACTTCAGCCGCEST: gi|34988413|gb|CF562330.1|CF562330
genomic: TCAAGCGTGGCCAGACCATCTCGATCTGCTCCTCGCTGGAGCCCGGCAAGgtgcgttgga ... tggcccgcagGTGCGCCAGGCCAAGATCGCTGAGCTGTTCGTGTACGACAACTTCAGCCGC
EST: TCAAGCGTGGCCAGACCATCTCGATCTGCTCCTCGCTGGAGCCCGGCAAG GTGCGCCAGGCCAAGATCGCTGAGCTGTTCGTGTACGACAACTTCAGCCGCEST: gi|14236860|gb|BG855676.1|BG855676
genomic: TCAAGCGTGGCCAGACCATCTCGATCTGCTCCTCGCTGGAGCCCGGCAAGgtgcgttgga ... tggcccgcagGTGCGCCAGGCCAAGATCGCTGAGCTGTTCGTGTACGACAACTTCAGCCGC
EST: AAGCGTGGCCAGACCATCTCGATCTGCTCCTCGCTGGAGCCCGGCAAG GTGCGCCAGGCCAAGATCGCTGAGCTGTTCGTGTACGACAACTTCAGCCGCEST: gi|161795524|gb|FC079708.1|FC079708
genomic: AAGCGTGGCCAGACCATCTCGATCTGCTCCTCGCTGGAGCCCGGCAAGgtgcgttgga ... tggcccgcagGTGCGCCAGGCCAAGATCGCTGAGCTGTTCGTGTACGACAACTTCAGCCGC
EST: TCAAGCGTGGCCAGACCATCTCGATCTGCTCCTCGCTGGAGCCCGGCAAG GTGCGCCAGGCCAAGATCGCTGAGCTGTTCGTGTACGACAACTTCAGCCGCEST: gi|34984913|gb|CF558830.1|CF558830
genomic: TCAAGCGTGGCCAGACCATCTCGATCTGCTCCTCGCTGGAGCCCGGCAAGgtgcgttgga ... tggcccgcagGTGCGCCAGGCCAAGATCGCTGAGCTGTTCGTGTACGACAACTTCAGCCGC
EST: CGATCTGCTCCTCGCTGGAGCCCGGCAAG GTGCGCCAGCCCAAGATCGCTGAGCTGTTCGTGTACGACAACTTCAGCCGCEST: gi|34985245|gb|CF559162.1|CF559162
genomic: CGATCTGCTCCTCGCTGGAGCCCGGCAAGgtgcgttgga ... tggcccgcagGTGCGCCAGGCCAAGATCGCTGAGCTGTTCGTGTACGACAACTTCAGCCGC
EST: TCAAGCGTGGCCAGACCATCTCGATCTGCTCCTCGCTGGAGCCCGGCAAG GTGCGCCAGGCCAAGATCGCTGAGCTGTTCGTGTACGACAACTTCAGCCGCEST: gi|34986186|gb|CF560103.1|CF560103
genomic: TCAAGCGTGGCCAGACCATCTCGATCTGCTCCTCGCTGGAGCCCGGCAAGgtgcgttgga ... tggcccgcagGTGCGCCAGGCCAAGATCGCTGAGCTGTTCGTGTACGACAACTTCAGCCGC
EST: TCAAGCGTGGCCAGACCATCTCGATCTGCTCCTCGCTGGAGCCCGGCAAG GTGCGCCAGGCCAAGATCGCTGAGCTGTTCGTGTACGACAACTTCAGCCGCEST: gi|22068537|gb|BQ818437.1|BQ818437
genomic: TCAAGCGTGGCCAGACCATCTCGATCTGCTCCTCGCTGGAGCCCGGCAAGgtgcgttgga ... tggcccgcagGTGCGCCAGGCCAAGATCGCTGAGCTGTTCGTGTACGACAACTTCAGCCGC
EST: TCAAGCGTGGCCAGACCATCTCGATCTGCTCCTCGCTGGAGCCCGGCAAG GTGCGCCAGGCCAAGATCGCTGAGCTGTTCGTGTACGACAACTTCAGEST: gi|34985816|gb|CF559733.1|CF559733
genomic: TCAAGCGTGGCCAGACCATCTCGATCTGCTCCTCGCTGGAGCCCGGCAAGgtgcgttgga ... tggcccgcagGTGCGCCAGGCCAAGATCGCTGAGCTGTTCGTGTACGACAACTTCAG
EST: TCAAGCGTGGCCAGACCATCTCGATCTGCTCCTCGCTGGAGCCCGGCAAG GTGCGCCAGGCCAAGATCGCTGAGCTGTTCGTGTACGACAACTTCAGCCGCEST: gi|34988414|gb|CF562331.1|CF562331
genomic: TCAAGCGTGGCCAGACCATCTCGATCTGCTCCTCGCTGGAGCCCGGCAAGgtgcgttgga ... tggcccgcagGTGCGCCAGGCCAAGATCGCTGAGCTGTTCGTGTACGACAACTTCAGCCGC
EST: TCAAGCGTGGCCAGACCATCTCGATCTGCTCCTCGCTGGAGCCCGGCAAG GTGCGCCAGGCCAAGATCGCTGAGCTGTTCGTGTACGACAACTTCAGCCGCEST: gi|34981931|gb|CF555848.1|CF555848
genomic: TCAAGCGTGGCCAGACCATCTCGATCTGCTCCTCGCTGGAGCCCGGCAAGgtgcgttgga ... tggcccgcagGTGCGCCAGGCCAAGATCGCTGAGCTGTTCGTGTACGACAACTTCAGCCGC
EST: TCAAGCGTGGCCAGACCATCTCGATCTGCTCCTCGCTGGAGCCCGGCAAG GTGCGCCAGGCCAAGATCGCTGAGCTGTTCGTGTACGACAACTTCAGCCGCEST: gi|34984915|gb|CF558832.1|CF558832
genomic: TCAAGCGTGGCCAGACCATCTCGATCTGCTCCTCGCTGGAGCCCGGCAAGgtgcgttgga ... tggcccgcagGTGCGCCAGGCCAAGATCGCTGAGCTGTTCGTGTACGACAACTTCAGCCGC
EST: TCAAGCGTGGCCAGACCATCTCGATCTGCTCCTCGCTGGAGCCCGGCAAG GTGCGCCAGGCCAAGATCGCTGAGCTGTTCGTGTACGACAACTTCAGCCGCEST: gi|10776843|gb|AV633523.1|AV633523
genomic: TCAAGCGTGGCCAGACCATCTCGATCTGCTCCTCGCTGGAGCCCGGCAAGgtgcgttgga ... tggcccgcagGTGCGCCAGGCCAAGATCGCTGAGCTGTTCGTGTACGACAACTTCAGCCGC
EST: TCAAGCGTGGCCAGACCATCTCGATCTGCTCCTCGCTGGAGCCCGGCAAG GTGCGCCAGGCCAAGATCGCTGAGCTGTTCGTGTACGACAACTTCAGCCGCEST: gi|6547128|gb|AV392912.1|AV392912
genomic: TCAAGCGTGGCCAGACCATCTCGATCTGCTCCTCGCTGGAGCCCGGCAAGgtgcgttgga ... tggcccgcagGTGCGCCAGGCCAAGATCGCTGAGCTGTTCGTGTACGACAACTTCAGCCGC
EST: CTCGCTGGAGCCCGGCAAG GTGCGCCAGGCCAAGATCGCTGAGCTGTTCGTGTACGGACAACTTCAGCCG
genomic: CTCGCTGGAGCCCGGCAAGgtgcgttgga ... tggcccgcagGTGCGCCAGGCCAAGATCGCTGAGCTGTTCGTGTAC-GACAACTTCAGCCG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CGATGAGCACAAGGGCCGCATCGCCATCGGCCGCGTCAGCAGCGGCACCATCAAGCGTGGCCAGACCATCTCGATCTGCTCCTCGCTGGAGCCCGGCAAGgtgcgttggaagccagcaccggaagggcacttatcaggccacattgcaaccttcgatctgggcggaatcgcaaagatgttgtttgccctaaccgcatgccttgcgttccccaatccattttggcccgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTCCTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA