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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CCCGTGGCTGCCGCTGCGCCTCTGCCTGCCGCTCGCCGTGCCGCGGCCTTTGGCGCCCCGGCTCGCCCTGTGACCGTCTGCCGCACCGCCACCGTCGATGgtgagtctttcactcaaacatttgtactggccaggccacctcgacacggctgggttgcttcccttgcacggtatcctaccccaccgtaccctgttgcgtgcggtactgagcccgatctgtccgcacccgttgcacattcctcaccgacag

Basic information

species Chlamydomonas reinhardtii
transcript EDO98397
intron # 2
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|49468545|gb|BP096406.1|BP096406
EST:     TGGCGCCCCGGCTCGCCCTGTGACCGTCTGCCGCACCGCCACCGTCGATG                         CTCCGGCGTCTGCCTCGTCTGAGGGGTCTGTGCGCGAGGACATCCGCAACA
genomic: TGGCGCCCCGGCTCGCCCTGTGACCGTCTGCCGCACCGCCACCGTCGATGgtgagtcttt ... tcaccgacagCTCCGGCGTCTGCCTCGTCTGAGGGGTCTGTGCGCGAGGACATCCGCAACA
EST: gi|10782963|gb|AV639635.1|AV639635
EST:     TGGCGCCCCGGCTCGCCCTGTGACCGTCTGCCGCACCGCCACCGTCGATG                         CTCCGGCGTCTGCCTCGTCTGAGGGGTCTGTGCGCGAGGACATCCGCAACA
genomic: TGGCGCCCCGGCTCGCCCTGTGACCGTCTGCCGCACCGCCACCGTCGATGgtgagtcttt ... tcaccgacagCTCCGGCGTCTGCCTCGTCTGAGGGGTCTGTGCGCGAGGACATCCGCAACA
EST: gi|10788132|gb|AV644804.1|AV644804
EST:     TGGCGCCCCGGCTCGCCCTGTGACCGTCTGCCGCACCGCCACCGTCGATG                         CTCCGGCGTCTGCCTCGTCTGAGGGGTCTGTGCGCGAGGACATCCGCAACA
genomic: TGGCGCCCCGGCTCGCCCTGTGACCGTCTGCCGCACCGCCACCGTCGATGgtgagtcttt ... tcaccgacagCTCCGGCGTCTGCCTCGTCTGAGGGGTCTGTGCGCGAGGACATCCGCAACA
EST: gi|10784426|gb|AV641098.1|AV641098
EST:     TGGCGCCCCGGCTCGCCCTGTGACCGTCTGCCGCACCGCCACCGTCGATG                         CTCCGGCGTCTGCCTCGTCTGAGGGGTCTGTGCGCGAGGACATCCGCAACA
genomic: TGGCGCCCCGGCTCGCCCTGTGACCGTCTGCCGCACCGCCACCGTCGATGgtgagtcttt ... tcaccgacagCTCCGGCGTCTGCCTCGTCTGAGGGGTCTGTGCGCGAGGACATCCGCAACA
EST: gi|10782992|gb|AV639664.1|AV639664
EST:     TGGCGCCCCGGCTCGCCCTGTGACCGTCTGCCGCACCGCCACCGTCGATG                         CTCCGGCGTCTGCCTCGTCTGAGGGGTCTGTGCGCGAGGACA
genomic: TGGCGCCCCGGCTCGCCCTGTGACCGTCTGCCGCACCGCCACCGTCGATGgtgagtcttt ... tcaccgacagCTCCGGCGTCTGCCTCGTCTGAGGGGTCTGTGCGCGAGGACA
EST: gi|10784113|gb|AV640785.1|AV640785
EST:     TGGCGCCCCGGCTCGCCCTGTGACCGTCTGCCGCACCGCCACCGTCGATG                         CTCCGGCGTCTGCCTCGTCTGAGGGGTCTGTGCGCGAGGACATCCGCAACA
genomic: TGGCGCCCCGGCTCGCCCTGTGACCGTCTGCCGCACCGCCACCGTCGATGgtgagtcttt ... tcaccgacagCTCCGGCGTCTGCCTCGTCTGAGGGGTCTGTGCGCGAGGACATCCGCAACA
EST: gi|10787070|gb|AV643742.1|AV643742
EST:     TGGCGCCCCGGCTCGCCCTGTGACCGTCTGCCGCACCGCCACCGTCGATG                         CTCCGGCGTCTGCCTCGTCTGAGGGGTCTGTGCGCGAGGACATCCGCAACA
genomic: TGGCGCCCCGGCTCGCCCTGTGACCGTCTGCCGCACCGCCACCGTCGATGgtgagtcttt ... tcaccgacagCTCCGGCGTCTGCCTCGTCTGAGGGGTCTGTGCGCGAGGACATCCGCAACA
EST: gi|10787824|gb|AV644496.1|AV644496
EST:     TGGCGCCCCGGCTCGCCCTGTGACCGTCTGCCGCACCGCCACCGTCGATG                         CTCCGGCGTCTGCCTCGTCTGAGGGGTCTGTGCGCGAGGACATCCGCAACA
genomic: TGGCGCCCCGGCTCGCCCTGTGACCGTCTGCCGCACCGCCACCGTCGATGgtgagtcttt ... tcaccgacagCTCCGGCGTCTGCCTCGTCTGAGGGGTCTGTGCGCGAGGACATCCGCAACA
EST: gi|161813272|gb|FC101441.1|FC101441
EST:     CGCCCTGTGACCGTCTGCCGCACCGCCACCGTCGATG                         CTCCGGCGTCTGCCTCGTCTGAGGGGTCTGTGCGCGAGGACATCCGCAACA
genomic: CGCCCTGTGACCGTCTGCCGCACCGCCACCGTCGATGgtgagtcttt ... tcaccgacagCTCCGGCGTCTGCCTCGTCTGAGGGGTCTGTGCGCGAGGACATCCGCAACA
EST: gi|10786131|gb|AV642803.1|AV642803
EST:     TGGCGCCCCGGCTCGCCCTGCGACCGTCTGCCGCACCGCCACCGTCGATG                         CTCCGGCGTCTGCCTCGTCTGAGGGGTCTGTGCGCGAGGACATCCGCAACA
genomic: TGGCGCCCCGGCTCGCCCTGTGACCGTCTGCCGCACCGCCACCGTCGATGgtgagtcttt ... tcaccgacagCTCCGGCGTCTGCCTCGTCTGAGGGGTCTGTGCGCGAGGACATCCGCAACA
EST: gi|10787248|gb|AV643920.1|AV643920
EST:     TGGCGCCCCGGCTCGCCCTGTGACCGTCTGCCGCACCGCCACCGTCGATG                         CTCCGGCGTCTGCCTCGTCTGAGGGGTCTGTGCGCGAGGACATCCGCAACA
genomic: TGGCGCCCCGGCTCGCCCTGTGACCGTCTGCCGCACCGCCACCGTCGATGgtgagtcttt ... tcaccgacagCTCCGGCGTCTGCCTCGTCTGAGGGGTCTGTGCGCGAGGACATCCGCAACA
EST: gi|10786937|gb|AV643609.1|AV643609
EST:     TGGCGCCCCGGCTCGCCCTGTGACCGTCTGCCGCACCGCCACCGTCGATG                         CTCCGGCGTCTGCCTCGTCTGAGGGGTCTGTGCGCGAGGACATCCGCAACA
genomic: TGGCGCCCCGGCTCGCCCTGTGACCGTCTGCCGCACCGCCACCGTCGATGgtgagtcttt ... tcaccgacagCTCCGGCGTCTGCCTCGTCTGAGGGGTCTGTGCGCGAGGACATCCGCAACA
EST: gi|10787542|gb|AV644214.1|AV644214
EST:     TGGCGCCCCGGCTCGCCCTGTGACCGTCTGCCGCACCGCCACCGTCGATG                         CTCCGGCGTCTGCCTCGTCTGAGGGGTCTGTGCGCGAGGACATCCGCAACA
genomic: TGGCGCCCCGGCTCGCCCTGTGACCGTCTGCCGCACCGCCACCGTCGATGgtgagtcttt ... tcaccgacagCTCCGGCGTCTGCCTCGTCTGAGGGGTCTGTGCGCGAGGACATCCGCAACA
EST: gi|49466811|gb|BP094724.1|BP094724
EST:     TGGCGCCCCGGCTCGCCCTGTGACCGTCTGCCGCACCGCCACCGTCGATG                         CTCCGGCGTCTGCCTCGTCTGAGGGGTCTGTGCGCGAGGACATCCGCAACA
genomic: TGGCGCCCCGGCTCGCCCTGTGACCGTCTGCCGCACCGCCACCGTCGATGgtgagtcttt ... tcaccgacagCTCCGGCGTCTGCCTCGTCTGAGGGGTCTGTGCGCGAGGACATCCGCAACA
EST: gi|10788160|gb|AV644832.1|AV644832
EST:     TGGCGCCCCGGCTCGCCCTGTGACCGTCTGCCGCACCGCCACCGTCGATG                         CTCCGGCGTCTGCCTCGTCTGAGGGGTCTGTGCGCGAGGACATCCGCAACA
genomic: TGGCGCCCCGGCTCGCCCTGTGACCGTCTGCCGCACCGCCACCGTCGATGgtgagtcttt ... tcaccgacagCTCCGGCGTCTGCCTCGTCTGAGGGGTCTGTGCGCGAGGACATCCGCAACA
EST: gi|10789572|gb|AV645301.1|AV645301
EST:     TGCCGCACCGCCACCGTCGATG                         CTCCGGCGTCTGCCTCGTCTGAGGGGTCTGTGCGCGAGGACATCCGCAACA
genomic: TGCCGCACCGCCACCGTCGATGgtgagtcttt ... tcaccgacagCTCCGGCGTCTGCCTCGTCTGAGGGGTCTGTGCGCGAGGACATCCGCAACA
EST: gi|10785772|gb|AV642444.1|AV642444
EST:     TGGCGCCCCGGCTCGCCCTGTGACCGTCTGCCGCACCGCCACCGTCGATG                         CTCCGGCGTCTGCCTCGTCTGAGGGGTCTGTGCGCGAGGACATCCGCAACA
genomic: TGGCGCCCCGGCTCGCCCTGTGACCGTCTGCCGCACCGCCACCGTCGATGgtgagtcttt ... tcaccgacagCTCCGGCGTCTGCCTCGTCTGAGGGGTCTGTGCGCGAGGACATCCGCAACA
EST: gi|10786776|gb|AV643448.1|AV643448
EST:     TGGCGCCCCGGCTCGCCCTGTGACCGTCTGCCGCACCGCCACCGTCGATG                         CTCCGGCGTCTGCCTCGTCTGAGGGGTCTGTGCGCGAGGACATCCGCAACA
genomic: TGGCGCCCCGGCTCGCCCTGTGACCGTCTGCCGCACCGCCACCGTCGATGgtgagtcttt ... tcaccgacagCTCCGGCGTCTGCCTCGTCTGAGGGGTCTGTGCGCGAGGACATCCGCAACA
EST: gi|10791188|gb|AV628554.1|AV628554
EST:     TGGCGCCCCGGCTCGCCCTGTGACCGTCTGCCGCACCGCCACCGTCGATG                         CTCCGGCGTCTGCCTCGTCTGAGGGGTCTGTGCGCGAGGACATCCGCAACA
genomic: TGGCGCCCCGGCTCGCCCTGTGACCGTCTGCCGCACCGCCACCGTCGATGgtgagtcttt ... tcaccgacagCTCCGGCGTCTGCCTCGTCTGAGGGGTCTGTGCGCGAGGACATCCGCAACA
EST: gi|10786864|gb|AV643536.1|AV643536
EST:     TGGCGCCCCGGCTCGCCCTGTGACCGTCTGCCGCACCGCCACCGTCGATG                         CTCCGGCGTCTGCCTCGTCTGAGGGGTCTGTGCGCGAGGACATCCGCAACA
genomic: TGGCGCCCCGGCTCGCCCTGTGACCGTCTGCCGCACCGCCACCGTCGATGgtgagtcttt ... tcaccgacagCTCCGGCGTCTGCCTCGTCTGAGGGGTCTGTGCGCGAGGACATCCGCAACA
EST: gi|10783914|gb|AV640586.1|AV640586
EST:     TGGCGCCCCGGCTCGCCCTGTGACCGTCTGCCGCACCGCCACCGTCGATG                         CTCCGGCGTCTGCCTCGTCTGAGGGGTCTGTGCGCGAGGACATCCGCAACA
genomic: TGGCGCCCCGGCTCGCCCTGTGACCGTCTGCCGCACCGCCACCGTCGATGgtgagtcttt ... tcaccgacagCTCCGGCGTCTGCCTCGTCTGAGGGGTCTGTGCGCGAGGACATCCGCAACA
EST: gi|49469202|gb|BP097063.1|BP097063
EST:     TGGCGCCCCGGCTCGCCCTGTGACCGTCTGCCGCACCGCCACCGTCGATG                         CTCCGGCGTCTGCCTCGTCTGAGGGGTCTGTGCGCGAGGACATCCGCAACA
genomic: TGGCGCCCCGGCTCGCCCTGTGACCGTCTGCCGCACCGCCACCGTCGATGgtgagtcttt ... tcaccgacagCTCCGGCGTCTGCCTCGTCTGAGGGGTCTGTGCGCGAGGACATCCGCAACA
EST: gi|10787514|gb|AV644186.1|AV644186
EST:     GTGCGCCCCGGCTCGCCCTGTGACCGTCTGCCGCACCGCCACCGTCGATG                         CTCCGGCGTCTGCCTCGTCTGAGGGGTCTGTGCGCGAGGACATCCGCAACA
genomic: G-GCGCCCCGGCTCGCCCTGTGACCGTCTGCCGCACCGCCACCGTCGATGgtgagtcttt ... tcaccgacagCTCCGGCGTCTGCCTCGTCTGAGGGGTCTGTGCGCGAGGACATCCGCAACA
EST: gi|10787307|gb|AV643979.1|AV643979
EST:     TGGCGCCCCGGCTCGCCCTGTGACCGTCTGCCGCACCGCCACCGTCGATG                         CTCCGGCGTCTGCCTCGTCTGAGGGGTCTGTGCGCGAGGACATCCGCAACA
genomic: TGGCGCCCCGGCTCGCCCTGTGACCGTCTGCCGCACCGCCACCGTCGATGgtgagtcttt ... tcaccgacagCTCCGGCGTCTGCCTCGTCTGAGGGGTCTGTGCGCGAGGACATCCGCAACA
EST: gi|10785156|gb|AV641828.1|AV641828
EST:     TGGCGCCCCGGCTCGCCCTGTGACCGTCTGCCGCACCGCCACCGTCGATG                         CTCCGGCGTCTGCCTCGTCTGAGGGGTCTGTGCGCGAGGACATCCGCAACA
genomic: TGGCGCCCCGGCTCGCCCTGTGACCGTCTGCCGCACCGCCACCGTCGATGgtgagtcttt ... tcaccgacagCTCCGGCGTCTGCCTCGTCTGAGGGGTCTGTGCGCGAGGACATCCGCAACA
EST: gi|10787701|gb|AV644373.1|AV644373
EST:     TGGCGCCCCGGCTCGCCCTGTGACCGTCTGCCGCACCGCCACCGTCGATG                         CTCCGGCGTCTGCCTCGTCTGAGGGGTCTGTGCGCGAGGACATCCGCAACA
genomic: TGGCGCCCCGGCTCGCCCTGTGACCGTCTGCCGCACCGCCACCGTCGATGgtgagtcttt ... tcaccgacagCTCCGGCGTCTGCCTCGTCTGAGGGGTCTGTGCGCGAGGACATCCGCAACA
EST: gi|23360235|gb|BU648055.1|BU648055
EST:     TGGCGCCCCGGCTCGCCCTGTGACCGTCTGCCGCACCGCCACCGTCGATG                         CTCCGGCGTCTGCCTCGTCTGAGGGGTCTGTGCGCGAGGACATCCGCAACA
genomic: TGGCGCCCCGGCTCGCCCTGTGACCGTCTGCCGCACCGCCACCGTCGATGgtgagtcttt ... tcaccgacagCTCCGGCGTCTGCCTCGTCTGAGGGGTCTGTGCGCGAGGACATCCGCAACA