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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGCGGCTGGTGACATCTGTGCGCTGTCGGGCATTGCCGATATCAAGATCGGCGAGACCATCACCCAGCGCGAGAACCCCGTGCCCCTGCCCACCATCCAGgtacgagggtcggggttccatagacaacggggcctgagtatggaaaaggatcaggcgcttagcaacgtacacgcatgtacacggcggctagagtcactaa...

Basic information

species Chlamydomonas reinhardtii
transcript EDO98397
intron # 10
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|34986729|gb|CF560646.1|CF560646
EST:     GCGAGAACCCCGTGCCCCTGCCCACCATCCAG                         GTGGAGGACCCAACCGTGAACATGACCTTCAAGGTCAACACCTCGCCCTTC
genomic: GCGAGAACCCCGTGCCCCTGCCCACCATCCAGgtacgagggt ... cccgcttcagGTGGAGGACCCAACCGTGAACATGACCTTCAAGGTCAACACCTCGCCCTTC
EST: gi|34986731|gb|CF560648.1|CF560648
EST:     GCGAGAACCCCGTGCCCCTGCCCACCATCCAG                         GTGGAGGACCCAACCGTGAACATGACCTTCAAGGTCAACACCTCGCCCTTC
genomic: GCGAGAACCCCGTGCCCCTGCCCACCATCCAGgtacgagggt ... cccgcttcagGTGGAGGACCCAACCGTGAACATGACCTTCAAGGTCAACACCTCGCCCTTC
EST: gi|34987981|gb|CF561898.1|CF561898
EST:     GCGAGACCATCACCCAGCGCGAGAACCCCGTGCCCCTGCCCACCATCCAG                         GTGGAGGACCCAACCGTGAACATGACCTTCAAGGTCAACACCTCGCCCTTC
genomic: GCGAGACCATCACCCAGCGCGAGAACCCCGTGCCCCTGCCCACCATCCAGgtacgagggt ... cccgcttcagGTGGAGGACCCAACCGTGAACATGACCTTCAAGGTCAACACCTCGCCCTTC
EST: gi|10784235|gb|AV640907.1|AV640907
EST:     GCGAGACCATCACCCAGCGCGAGAACCCCGTGCCCCTGCCCACCATCCAG                         GTGGAGGACCCAACCGTGAACATGACCTTCAAGGTCAACACCTCGCCCTTC
genomic: GCGAGACCATCACCCAGCGCGAGAACCCCGTGCCCCTGCCCACCATCCAGgtacgagggt ... cccgcttcagGTGGAGGACCCAACCGTGAACATGACCTTCAAGGTCAACACCTCGCCCTTC
EST: gi|49462475|gb|BP090388.1|BP090388
EST:     GCGAGACCATCACCCAGCGCGAGAACCCCGTGCCCCTGCCCACCATCCAG                         GTGGAGGACCCAACCGTGAACATGACCTTCAAGGTCAACACCTCGCCCTTC
genomic: GCGAGACCATCACCCAGCGCGAGAACCCCGTGCCCCTGCCCACCATCCAGgtacgagggt ... cccgcttcagGTGGAGGACCCAACCGTGAACATGACCTTCAAGGTCAACACCTCGCCCTTC
EST: gi|34988709|gb|CF562626.1|CF562626
EST:     GCGAGACCATCACCCAGCGCGAGAACCCCGTGCCCCTGCCCACCATCCAG                         GTGGAGGACCCAACCGTGAACATGACCTTCAAGGTCAACACCTCGCCCTTC
genomic: GCGAGACCATCACCCAGCGCGAGAACCCCGTGCCCCTGCCCACCATCCAGgtacgagggt ... cccgcttcagGTGGAGGACCCAACCGTGAACATGACCTTCAAGGTCAACACCTCGCCCTTC
EST: gi|49461995|gb|BP089908.1|BP089908
EST:     CCGTGCCCCTGCCCACCATCCAG                         GTGGAGGACCCAACCGTGAACATGACCTTCAAGGTCAACACCTCGCCCTTC
genomic: CCGTGCCCCTGCCCACCATCCAGgtacgagggt ... cccgcttcagGTGGAGGACCCAACCGTGAACATGACCTTCAAGGTCAACACCTCGCCCTTC
EST: gi|34988866|gb|CF562783.1|CF562783
EST:     GCGAGAACCCCGTGCCCCTGCCCACCATCCAG                         GTGGAGGACCCAACCGTGAACATGACCTTCAAGGTCAACACCTCGCCCTTC
genomic: GCGAGAACCCCGTGCCCCTGCCCACCATCCAGgtacgagggt ... cccgcttcagGTGGAGGACCCAACCGTGAACATGACCTTCAAGGTCAACACCTCGCCCTTC
EST: gi|34990038|gb|CF563955.1|CF563955
EST:     GCGAGACCATCACCCAGCGCGAGAACCCCGTGCCCCTGCCCACCATCCAG                         GTGGAGGACCCAACCGTGAACATGACCTTCAAGGTCAACACCTCGCCCTTC
genomic: GCGAGACCATCACCCAGCGCGAGAACCCCGTGCCCCTGCCCACCATCCAGgtacgagggt ... cccgcttcagGTGGAGGACCCAACCGTGAACATGACCTTCAAGGTCAACACCTCGCCCTTC
EST: gi|34989751|gb|CF563668.1|CF563668
EST:     GCGAGAACCCCGTGCCCCTGCCCACCATCCAG                         GTGGAGGACCCAACCGTGAACATGACCTTCAAGGTCAACACCTCGCCCTTC
genomic: GCGAGAACCCCGTGCCCCTGCCCACCATCCAGgtacgagggt ... cccgcttcagGTGGAGGACCCAACCGTGAACATGACCTTCAAGGTCAACACCTCGCCCTTC
EST: gi|14239935|gb|BG858751.1|BG858751
EST:     GCGAGACCATCACCCAGCGCGAGAACCCCGTGCCCCTGCCCACCATCCAG                         GTGGAGGACCCAACCGTGAACATGACCTTCAAGGTCAACACCTCGCCCTTC
genomic: GCGAGACCATCACCCAGCGCGAGAACCCCGTGCCCCTGCCCACCATCCAGgtacgagggt ... cccgcttcagGTGGAGGACCCAACCGTGAACATGACCTTCAAGGTCAACACCTCGCCCTTC
EST: gi|14240417|gb|BG859233.1|BG859233
EST:     GCGAGACCATCACCCAGCGCGAGAACCCCGTGCCCCTGCCCACCATCCAG                         GTGGAGGACCCAACCGTGAACATGACCTTCAAGGTCAACACCTCGCCCTTC
genomic: GCGAGACCATCACCCAGCGCGAGAACCCCGTGCCCCTGCCCACCATCCAGgtacgagggt ... cccgcttcagGTGGAGGACCCAACCGTGAACATGACCTTCAAGGTCAACACCTCGCCCTTC
EST: gi|34983932|gb|CF557849.1|CF557849
EST:     GCGAGACCATCACCCAGCGCGAGAACCCCGTGCCCCTGCCCACCATCCAG                         GTGGAGGACCCAACCGTGAACATGACCTTCAAGGTCAACACCTCGCCCTTC
genomic: GCGAGACCATCACCCAGCGCGAGAACCCCGTGCCCCTGCCCACCATCCAGgtacgagggt ... cccgcttcagGTGGAGGACCCAACCGTGAACATGACCTTCAAGGTCAACACCTCGCCCTTC
EST: gi|10775954|gb|AV632634.1|AV632634
EST:     GCGAGACCATCACCCAGCGCGAGAACCCCGTGCCCCTGCCCACCATCCAG                         GTGGAGGACCCAACCGTGAACATGACCTTCAAGGTCAACACCTCGCCCTTC
genomic: GCGAGACCATCACCCAGCGCGAGAACCCCGTGCCCCTGCCCACCATCCAGgtacgagggt ... cccgcttcagGTGGAGGACCCAACCGTGAACATGACCTTCAAGGTCAACACCTCGCCCTTC
EST: gi|34986185|gb|CF560102.1|CF560102
EST:     GCGAGACCATCACCCAGCGCGAGAACCCCGTGCCCCTGCCCACCATCCAG                         GTGGAGGACCCAACCGTGAACATGACCTTCAAGGTCAACACCTCGCCCTTC
genomic: GCGAGACCATCACCCAGCGCGAGAACCCCGTGCCCCTGCCCACCATCCAGgtacgagggt ... cccgcttcagGTGGAGGACCCAACCGTGAACATGACCTTCAAGGTCAACACCTCGCCCTTC
EST: gi|34987979|gb|CF561896.1|CF561896
EST:     GCGAGACCATCACCCAGCGCGAGAACCCCGTGCCCCTGCCCACCATCCAG                         GTGGAGGACCCAACCGTGAACATGACCTTCAAGGTCAACACCTCGCCCTTC
genomic: GCGAGACCATCACCCAGCGCGAGAACCCCGTGCCCCTGCCCACCATCCAGgtacgagggt ... cccgcttcagGTGGAGGACCCAACCGTGAACATGACCTTCAAGGTCAACACCTCGCCCTTC
EST: gi|10775220|gb|AV631900.1|AV631900
EST:     GCCCCTGCCCACCATCCAG                         GTGGAGGACCCAACCGTGAACATGACCTTCAAGGTCAACACCTCGCCCTTC
genomic: GCCCCTGCCCACCATCCAGgtacgagggt ... cccgcttcagGTGGAGGACCCAACCGTGAACATGACCTTCAAGGTCAACACCTCGCCCTTC
EST: gi|34983874|gb|CF557791.1|CF557791
EST:     GCGAGAACCCCGTGCCCCTGCCCACCATCCAG                         GTGGAGGACCCAACCGTGAACATGACCTTCAAGGTCAACACCTCGCCCTTC
genomic: GCGAGAACCCCGTGCCCCTGCCCACCATCCAGgtacgagggt ... cccgcttcagGTGGAGGACCCAACCGTGAACATGACCTTCAAGGTCAACACCTCGCCCTTC
EST: gi|34982136|gb|CF556053.1|CF556053
EST:     GCGAGAACCCCGTGCCCCTGCCCACCATCCAG                         GTGGAGGACCCAACCGTGAACATGACCTTCAAGGTCAACACCTCGCCCTTC
genomic: GCGAGAACCCCGTGCCCCTGCCCACCATCCAGgtacgagggt ... cccgcttcagGTGGAGGACCCAACCGTGAACATGACCTTCAAGGTCAACACCTCGCCCTTC
EST: gi|34986407|gb|CF560324.1|CF560324
EST:     GCGAGACCATCACCCAGCGCGAGAACCCCGTGCCCCTGCCCACCATCCAG                         GTGGAGGACCCAACCGTGAACATGACCTTCAAGGTCAACACCTCGCCCTTC
genomic: GCGAGACCATCACCCAGCGCGAGAACCCCGTGCCCCTGCCCACCATCCAGgtacgagggt ... cccgcttcagGTGGAGGACCCAACCGTGAACATGACCTTCAAGGTCAACACCTCGCCCTTC
EST: gi|34988276|gb|CF562193.1|CF562193
EST:     GCGAGAACCCCGTGCCCCTGCCCACCATCCAG                         GTGGAGGACCCAACCGTGAACATGACCTTCAAGGTCAACACCTCGCCCTTC
genomic: GCGAGAACCCCGTGCCCCTGCCCACCATCCAGgtacgagggt ... cccgcttcagGTGGAGGACCCAACCGTGAACATGACCTTCAAGGTCAACACCTCGCCCTTC
EST: gi|161807860|gb|FC098973.1|FC098973
EST:     GCGAGACCATCACGCAGCGCGAGAACCCCGTGCCCCTGCCCACCATCCAG                         GTGGAGGACCCCACCGTGAACATGACCTTCAAGGTCAACACCTCGCCCTTC
genomic: GCGAGACCATCACCCAGCGCGAGAACCCCGTGCCCCTGCCCACCATCCAGgtacgagggt ... cccgcttcagGTGGAGGACCCAACCGTGAACATGACCTTCAAGGTCAACACCTCGCCCTTC
EST: gi|10779636|gb|AV636316.1|AV636316
EST:     GCGAGACCATCACCCAGCGCGAGAACCCCGTGCCCCTGCCCACCATCCAG                         GTGGAGGACCCAACCGTGAACATGACCTTCAAGGTCAACACCTCGCCCTTC
genomic: GCGAGACCATCACCCAGCGCGAGAACCCCGTGCCCCTGCCCACCATCCAGgtacgagggt ... cccgcttcagGTGGAGGACCCAACCGTGAACATGACCTTCAAGGTCAACACCTCGCCCTTC
EST: gi|34991853|gb|CF565770.1|CF565770
EST:     GCGAGACCATCACCCAGCGCGAGAACCCCGTGCCCCTGCCCACCATCCAG                         GTGGAGGACCCAACCGTGAACATGACCTTCAAGGTCAACACCTCGCCCT
genomic: GCGAGACCATCACCCAGCGCGAGAACCCCGTGCCCCTGCCCACCATCCAGgtacgagggt ... cccgcttcagGTGGAGGACCCAACCGTGAACATGACCTTCAAGGTCAACACCTCGCCCT
EST: gi|6549469|gb|AV395253.1|AV395253
EST:     GCGAGACCATCACCCAGCGCGAGAACCCCGTGCCCCTGCCCACCATCCAG                         GTGGAGGACCCAACCGTGAACATGACCTTCAAGGTCAACACCTCGCCCTTC
genomic: GCGAGACCATCACCCAGCGCGAGAACCCCGTGCCCCTGCCCACCATCCAGgtacgagggt ... cccgcttcagGTGGAGGACCCAACCGTGAACATGACCTTCAAGGTCAACACCTCGCCCTTC
EST: gi|22075814|gb|BQ824590.1|BQ824590
EST:     GCGAGACCATCACCCAGCGCGAGAACCCCGTGCCCCTGCCCACCATCCAG                         GTGGAGGACCCAACCGTGAACATGACCTTCAAGGTC
genomic: GCGAGACCATCACCCAGCGCGAGAACCCCGTGCCCCTGCCCACCATCCAGgtacgagggt ... cccgcttcagGTGGAGGACCCAACCGTGAACATGACCTTCAAGGTC
EST: gi|7686797|gb|AW757445.1|AW757445
EST:     GCGAGACCATCACCCAGCGCGAGAACCCCGTGCCCCTGCCCACCATCCAG                         GTGGAGGACCCAACCGTGAACATGACCTTCAAGGTCAACACCTCGCCCTTC
genomic: GCGAGACCATCACCCAGCGCGAGAACCCCGTGCCCCTGCCCACCATCCAGgtacgagggt ... cccgcttcagGTGGAGGACCCAACCGTGAACATGACCTTCAAGGTCAACACCTCGCCCTTC
EST: gi|34987294|gb|CF561211.1|CF561211
EST:     GCGAGAACCCCGTGCCCCTGCCCACCATCCAG                         GTGGAGGACCCAACCGTGAACATGACCTTCAAGGTCAACACCTCGCCCTTC
genomic: GCGAGAACCCCGTGCCCCTGCCCACCATCCAGgtacgagggt ... cccgcttcagGTGGAGGACCCAACCGTGAACATGACCTTCAAGGTCAACACCTCGCCCTTC
EST: gi|10125782|gb|BE724486.1|BE724486
EST:     GCGAGACCATCACCCAGCGCGAGAACCCCGTGCCCCTGCCCACCATCCAG                         GTGGAGGACCCAACCGTGAACATGACCTTCAAGGTCAACACCTCGCCCTTC
genomic: GCGAGACCATCACCCAGCGCGAGAACCCCGTGCCCCTGCCCACCATCCAGgtacgagggt ... cccgcttcagGTGGAGGACCCAACCGTGAACATGACCTTCAAGGTCAACACCTCGCCCTTC
EST: gi|34983872|gb|CF557789.1|CF557789
EST:     GCGAGAACCCCGTGCCCCTGCCCACCATCCAG                         GTGGAGGACCCAACCGTGAACATGACCTTCAAGGTCAACACCTCGCCCTTC
genomic: GCGAGAACCCCGTGCCCCTGCCCACCATCCAGgtacgagggt ... cccgcttcagGTGGAGGACCCAACCGTGAACATGACCTTCAAGGTCAACACCTCGCCCTTC
EST: gi|34985244|gb|CF559161.1|CF559161
EST:     GCGAGACCATCACCCAGCGCGAGAACCCCGTGCCCCTGCCCACCATCCAG                         GTGGAGGACCCAACCGTGAACATGACCTTCAAGGTCAACACCTCGCCCTTC
genomic: GCGAGACCATCACCCAGCGCGAGAACCCCGTGCCCCTGCCCACCATCCAGgtacgagggt ... cccgcttcagGTGGAGGACCCAACCGTGAACATGACCTTCAAGGTCAACACCTCGCCCTTC
EST: gi|34989750|gb|CF563667.1|CF563667
EST:     GCGAGAACCCCGTGCCCCTGCCCACCATCCAG                         GTGGAGGACCCAACCGTGAACATGACCTTCAAGGTCAACACCTCGCCCTTC
genomic: GCGAGAACCCCGTGCCCCTGCCCACCATCCAGgtacgagggt ... cccgcttcagGTGGAGGACCCAACCGTGAACATGACCTTCAAGGTCAACACCTCGCCCTTC
EST: gi|34982603|gb|CF556520.1|CF556520
EST:     GCGAGAACCCCGTGCCCCTGCCCACCATCCAG                         GTGGAGGACCCAACCGTGAACATGACCTTCAAGGTCAACACCTCGCCCTTC
genomic: GCGAGAACCCCGTGCCCCTGCCCACCATCCAGgtacgagggt ... cccgcttcagGTGGAGGACCCAACCGTGAACATGACCTTCAAGGTCAACACCTCGCCCTTC
EST: gi|49462696|gb|BP090609.1|BP090609
EST:     CGAGAACCCCGTGCCCCTGCCCACCATCTAG                         GTGGAGGACCCAACCGTGAACATGACCTTCAAGGTCAACACCTCGCCCTTC
genomic: CGAGAACCCCGTGCCCCTGCCCACCATCCAGgtacgagggt ... cccgcttcagGTGGAGGACCCAACCGTGAACATGACCTTCAAGGTCAACACCTCGCCCTTC
EST: gi|34983873|gb|CF557790.1|CF557790
EST:     GCGAGAACCCCGTGCCCCTGCCCACCATCCAG                         GTGGAGGACCCAACCGTGAACATGACCTTCAAGGTCAACACCTCGCCCTTC
genomic: GCGAGAACCCCGTGCCCCTGCCCACCATCCAGgtacgagggt ... cccgcttcagGTGGAGGACCCAACCGTGAACATGACCTTCAAGGTCAACACCTCGCCCTTC
EST: gi|34982604|gb|CF556521.1|CF556521
EST:     GCGAGAACCCCGTGCCCCTGCCCACCATCCAG                         GTGGAGGACCCAACCGTGAACATGACCTTCAAGGTCAACACCTCGCCCTTC
genomic: GCGAGAACCCCGTGCCCCTGCCCACCATCCAGgtacgagggt ... cccgcttcagGTGGAGGACCCAACCGTGAACATGACCTTCAAGGTCAACACCTCGCCCTTC
EST: gi|34990037|gb|CF563954.1|CF563954
EST:     GCGAGACCATCACCCAGCGCGAGAACCCCGTGCCCCTGCCCACCATCCAG                         GTGGAGGACCCAACCGTGAACATGACCTTCAAGGTCAACACCTCGCCCTTC
genomic: GCGAGACCATCACCCAGCGCGAGAACCCCGTGCCCCTGCCCACCATCCAGgtacgagggt ... cccgcttcagGTGGAGGACCCAACCGTGAACATGACCTTCAAGGTCAACACCTCGCCCTTC
EST: gi|34983933|gb|CF557850.1|CF557850
EST:     GCGAGACCATCACCCAGCGCGAGAACCCCGTGCCCCTGCCCACCATCCAG                         GTGGAGGACCCAACCGTGAACATGACCTTCAAGGTCAACACCTCGCCCTTC
genomic: GCGAGACCATCACCCAGCGCGAGAACCCCGTGCCCCTGCCCACCATCCAGgtacgagggt ... cccgcttcagGTGGAGGACCCAACCGTGAACATGACCTTCAAGGTCAACACCTCGCCCTTC
EST: gi|10780479|gb|AV637159.1|AV637159
EST:     GAGACCATCACCCAGCGCGAGAACCCCGGTGCCCCTGGCCCACCATCCAG                         GTGGAGGACCCAACCGTGAACATGACCTTCAAGGTCAACACCTCGCCCTTC
genomic: GAGACCATCACCCAGCGCGAGAACCCC-GTGCCCCT-GCCCACCATCCAGgtacgagggt ... cccgcttcagGTGGAGGACCCAACCGTGAACATGACCTTCAAGGTCAACACCTCGCCCTTC
EST: gi|34990036|gb|CF563953.1|CF563953
EST:     GCGAGACCATCACCCAGCGCGAGAACCCCGTGCCCCTGCCCACCATCCAG                         GTGGAGGACCCAACCGTGAACATGACCTTCAAGGTCAACACCTCGCCCTTC
genomic: GCGAGACCATCACCCAGCGCGAGAACCCCGTGCCCCTGCCCACCATCCAGgtacgagggt ... cccgcttcagGTGGAGGACCCAACCGTGAACATGACCTTCAAGGTCAACACCTCGCCCTTC
EST: gi|34985817|gb|CF559734.1|CF559734
EST:     GCGAGACCATCACCCAGCGCGAGAACCCCGTGCCCCTGCCCACCATCCAG                         GTGGAGGACCCAACCGTGAACATGACCTTCAAGGTCAACACCTCGCCCTTC
genomic: GCGAGACCATCACCCAGCGCGAGAACCCCGTGCCCCTGCCCACCATCCAGgtacgagggt ... cccgcttcagGTGGAGGACCCAACCGTGAACATGACCTTCAAGGTCAACACCTCGCCCTTC
EST: gi|34981930|gb|CF555847.1|CF555847
EST:     GCGAGACCATCACCCAGCGCGAGAACCCCGTGCCCCTGCCCACCATCCAG                         GTGGAGGACCCAACCGTGAACATGACCTTCAAGGTCAACACCTCGCCCTTC
genomic: GCGAGACCATCACCCAGCGCGAGAACCCCGTGCCCCTGCCCACCATCCAGgtacgagggt ... cccgcttcagGTGGAGGACCCAACCGTGAACATGACCTTCAAGGTCAACACCTCGCCCTTC
EST: gi|34985799|gb|CF559716.1|CF559716
EST:     GCGAGACCATCACCCAGCGCGAGAACCCCGTGCCCCTGCCCACCATCCAG                         GTGGAGGACCCAACCGTGAACATGACCTTCAAGGTCAACACCTCGCCCTTC
genomic: GCGAGACCATCACCCAGCGCGAGAACCCCGTGCCCCTGCCCACCATCCAGgtacgagggt ... cccgcttcagGTGGAGGACCCAACCGTGAACATGACCTTCAAGGTCAACACCTCGCCCTTC
EST: gi|34982137|gb|CF556054.1|CF556054
EST:     GCGAGAACCCCGTGCCCCTGCCCACCATCCAG                         GTGGAGGACCCAACCGTGAACATGACCTTCAAGGTCAACACCTCGCCCTTC
genomic: GCGAGAACCCCGTGCCCCTGCCCACCATCCAGgtacgagggt ... cccgcttcagGTGGAGGACCCAACCGTGAACATGACCTTCAAGGTCAACACCTCGCCCTTC
EST: gi|34984373|gb|CF558290.1|CF558290
EST:     GCGAGACCATCACCCAGCGCGAGAACCCCGTGCCCCTGCCCACCATCCAG                         GTGGAGGACCCAACCGTGAACATGACCTTCAAGGTCAACACCTCGCCCTTC
genomic: GCGAGACCATCACCCAGCGCGAGAACCCCGTGCCCCTGCCCACCATCCAGgtacgagggt ... cccgcttcagGTGGAGGACCCAACCGTGAACATGACCTTCAAGGTCAACACCTCGCCCTTC
EST: gi|34988413|gb|CF562330.1|CF562330
EST:     GCGAGACCATCACCCAGCGCGAGAACCCCGTGCCCCTGCCCACCATCCAG                         GTGGAGGACCCAACCGTGAACATGACCTTCAAGGTCAACACCTCGCCCTTC
genomic: GCGAGACCATCACCCAGCGCGAGAACCCCGTGCCCCTGCCCACCATCCAGgtacgagggt ... cccgcttcagGTGGAGGACCCAACCGTGAACATGACCTTCAAGGTCAACACCTCGCCCTTC
EST: gi|14236860|gb|BG855676.1|BG855676
EST:     GCGAGACCATCACCCAGCGCGAGAACCCCGTGCCCCTGCCCACCATCCAG                         GTGGAGGACCCAACCGTGAACATGACCTTCAAGGTCAACACCTCGCCCTTC
genomic: GCGAGACCATCACCCAGCGCGAGAACCCCGTGCCCCTGCCCACCATCCAGgtacgagggt ... cccgcttcagGTGGAGGACCCAACCGTGAACATGACCTTCAAGGTCAACACCTCGCCCTTC
EST: gi|161795524|gb|FC079708.1|FC079708
EST:     GCGAGACCATCACGCAGCGCGAGAACCCCGTGCCCCTGCCCACCATCCAG                         GTGGAGGACCCCACCGTGAACATGACCTTCAAGGTCAACACCTCGCCCTTC
genomic: GCGAGACCATCACCCAGCGCGAGAACCCCGTGCCCCTGCCCACCATCCAGgtacgagggt ... cccgcttcagGTGGAGGACCCAACCGTGAACATGACCTTCAAGGTCAACACCTCGCCCTTC
EST: gi|34984913|gb|CF558830.1|CF558830
EST:     GCGAGACCATCACCCAGCGCGAGAACCCCGTGCCCCTGCCCACCATCCAG                         GTGGAGGACCCAACCGTGAACATGACCTTCAAGGTCAACACCTCGCCCTTC
genomic: GCGAGACCATCACCCAGCGCGAGAACCCCGTGCCCCTGCCCACCATCCAGgtacgagggt ... cccgcttcagGTGGAGGACCCAACCGTGAACATGACCTTCAAGGTCAACACCTCGCCCTTC
EST: gi|34986431|gb|CF560348.1|CF560348
EST:     GCGAGAACCCCGTGCCCCTGCCCACCATCCAG                         GTGGAGGACCCAACCGTGAACATGACCTTCAAGGTCAACACCTCGCCCTTC
genomic: GCGAGAACCCCGTGCCCCTGCCCACCATCCAGgtacgagggt ... cccgcttcagGTGGAGGACCCAACCGTGAACATGACCTTCAAGGTCAACACCTCGCCCTTC
EST: gi|34985245|gb|CF559162.1|CF559162
EST:     GCGAGACCATCACCCAGCGCGAGAACCCCGTGCCCCTGCCCACCATCCAG                         GTGGAGGACCCAACCGTGAACATGACCTTCAAGGTCAACACCTCGCCCTTC
genomic: GCGAGACCATCACCCAGCGCGAGAACCCCGTGCCCCTGCCCACCATCCAGgtacgagggt ... cccgcttcagGTGGAGGACCCAACCGTGAACATGACCTTCAAGGTCAACACCTCGCCCTTC
EST: gi|22068536|gb|BQ818436.1|BQ818436
EST:     GCGAGACCATCACCCAGCGCGAGAACCCCGTGCCCCTGCCCACCATCCAG                         GTGGAGGACCCAACCGTGAACATGACCTTCAAGGTCAACACCTCGCCCTTC
genomic: GCGAGACCATCACCCAGCGCGAGAACCCCGTGCCCCTGCCCACCATCCAGgtacgagggt ... cccgcttcagGTGGAGGACCCAACCGTGAACATGACCTTCAAGGTCAACACCTCGCCCTTC
EST: gi|34986186|gb|CF560103.1|CF560103
EST:     GCGAGACCATCACCCAGCGCGAGAACCCCGTGCCCCTGCCCACCATCCAG                         GTGGAGGACCCAACCGTGAACATGACCTTCTAGGTCAACACCTCGCCCTTC
genomic: GCGAGACCATCACCCAGCGCGAGAACCCCGTGCCCCTGCCCACCATCCAGgtacgagggt ... cccgcttcagGTGGAGGACCCAACCGTGAACATGACCTTCAAGGTCAACACCTCGCCCTTC
EST: gi|34989676|gb|CF563593.1|CF563593
EST:     GCGAGACCATCACCCAGCGCGAGAACCCCGTGCCCCTGCCCACCATCCAG                         GTGGAGGACCCAACCGTGAACATGACCTTCAAGGTCAACACCTCGCCCTTC
genomic: GCGAGACCATCACCCAGCGCGAGAACCCCGTGCCCCTGCCCACCATCCAGgtacgagggt ... cccgcttcagGTGGAGGACCCAACCGTGAACATGACCTTCAAGGTCAACACCTCGCCCTTC
EST: gi|34985816|gb|CF559733.1|CF559733
EST:     GCGAGACCATCACCCAGCGCGAGAACCCCGTGCCCCTGCCCACCATCCAG                         GTGGAGGACCCAACCGTGAACATGACCTTCAAGGTCAACACCTCGCCCTTC
genomic: GCGAGACCATCACCCAGCGCGAGAACCCCGTGCCCCTGCCCACCATCCAGgtacgagggt ... cccgcttcagGTGGAGGACCCAACCGTGAACATGACCTTCAAGGTCAACACCTCGCCCTTC
EST: gi|34981931|gb|CF555848.1|CF555848
EST:     GCGAGACCATCACCCAGCGCGAGAACCCCGTGCCCCTGCCCACCATCCAG                         GTGGAGGACCCAACCGTGAACATGACCTTCAAGGTCAACACCTCGCCCTTC
genomic: GCGAGACCATCACCCAGCGCGAGAACCCCGTGCCCCTGCCCACCATCCAGgtacgagggt ... cccgcttcagGTGGAGGACCCAACCGTGAACATGACCTTCAAGGTCAACACCTCGCCCTTC
EST: gi|10788583|gb|AV626303.1|AV626303
EST:     GCGAGACCATCACCCAGCGCGAGAACCCCGTGCCCCTGCCCACCATCCAG                         GTGGAGGACCCAACCGTGAACATGACCTTCAAGGTCAACACCTCGCCCTTC
genomic: GCGAGACCATCACCCAGCGCGAGAACCCCGTGCCCCTGCCCACCATCCAGgtacgagggt ... cccgcttcagGTGGAGGACCCAACCGTGAACATGACCTTCAAGGTCAACACCTCGCCCTTC
EST: gi|34988708|gb|CF562625.1|CF562625
EST:     GCGAGGCCATCACCCAGCGCGAGAACCCCGTGCCCCTGCCCACCATCCAG                         GTGGAGGACCCAACCGTGAACATGACCTTCAAGGTCAACACCTCGCCCTTC
genomic: GCGAGACCATCACCCAGCGCGAGAACCCCGTGCCCCTGCCCACCATCCAGgtacgagggt ... cccgcttcagGTGGAGGACCCAACCGTGAACATGACCTTCAAGGTCAACACCTCGCCCTTC
EST: gi|34981120|gb|CF555037.1|CF555037
EST:     GCGAGACCATCACCCAGCGCGAGAACCCCGTGCCCCTGCCCACCATCCAG                         GTGGAGGACCCAACCGTGAACATGACCTTCAAGGTCAACACCTCGCCCTTC
genomic: GCGAGACCATCACCCAGCGCGAGAACCCCGTGCCCCTGCCCACCATCCAGgtacgagggt ... cccgcttcagGTGGAGGACCCAACCGTGAACATGACCTTCAAGGTCAACACCTCGCCCTTC
EST: gi|34981119|gb|CF555036.1|CF555036
EST:     GCGAGACCATCACCCAGCGCGAGAACCCCGTGCCCCTGCCCACCATCCAG                         GTGGAGGACCCAACCGTGAACATGACCTTCAAGGTCAACACCTCGCCCTTC
genomic: GCGAGACCATCACCCAGCGCGAGAACCCCGTGCCCCTGCCCACCATCCAGgtacgagggt ... cccgcttcagGTGGAGGACCCAACCGTGAACATGACCTTCAAGGTCAACACCTCGCCCTTC
EST: gi|6547128|gb|AV392912.1|AV392912
EST:     GCGAGACCATCACCCAGCGCGAGAACCCCGTGCCCCTGCCCACCATCCAG                         GTGGAGGACCCAACCGTGAACATGACCTTCAAGGTCAACACCTCGCCCTTC
genomic: GCGAGACCATCACCCAGCGCGAGAACCCCGTGCCCCTGCCCACCATCCAGgtacgagggt ... cccgcttcagGTGGAGGACCCAACCGTGAACATGACCTTCAAGGTCAACACCTCGCCCTTC

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GGCGGCTGGTGACATCTGTGCGCTGTCGGGCATTGCCGATATCAAGATCGGCGAGACCATCACCCAGCGCGAGAACCCCGTGCCCCTGCCCACCATCCAGgtacgagggtcggggttccatagacaacggggcctgagtatggaaaaggatcaggcgcttagcaacgtacacgcatgtacacggcggctagagtcactaa

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -atagaca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgagtat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - acacgca