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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTACAGAAGATTCAGCGCCAGGCCCAGCGCCAGGCCAGCGCCCAGGCGCCCCTGCGCGTTGAGGTGCCCGCTGTGAACCGCGCAGTGCCGTCGGCCGCAGgtgaggcgcatatgccaggggaacccaatccgtcttgcaaacccgccttctggctgtaagcaatatgcatgtgacatatgtaaagcatttgggccatgac...

Basic information

species Chlamydomonas reinhardtii
transcript EDO98397
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|49468545|gb|BP096406.1|BP096406
EST:     CCTGCGCGTTGAGGTGCCCGCTGTGAACCGCGCAGTGCCGTCGGCCGCAG                         CCGCTCCCGTGGCTGCCGCTGCGCCTCTGCCTGCCGCTCGCCGTGCCGCGG
genomic: CCTGCGCGTTGAGGTGCCCGCTGTGAACCGCGCAGTGCCGTCGGCCGCAGgtgaggcgca ... tgggcaacagCCGCTCCCGTGGCTGCCGCTGCGCCTCTGCCTGCCGCTCGCCGTGCCGCGG
EST: gi|10782963|gb|AV639635.1|AV639635
EST:     CCTGCGCGTTGAGGTGCCCGCTGTGAACCGCGCAGTGCCGTCGGCCGCAG                         CCGCTCCCGTGGCTGCCGCTGCGCCTCTGCCTGCCGCTCGCCGTGCCGCGG
genomic: CCTGCGCGTTGAGGTGCCCGCTGTGAACCGCGCAGTGCCGTCGGCCGCAGgtgaggcgca ... tgggcaacagCCGCTCCCGTGGCTGCCGCTGCGCCTCTGCCTGCCGCTCGCCGTGCCGCGG
EST: gi|10788132|gb|AV644804.1|AV644804
EST:     CCTGCGCGTTGAGGTGCCCGCTGTGAACCGCGCAGTGCCGTCGGCCGCAG                         CCGCTCCCGTGGCTGCCGCTGCGCCTCTGCCTGCCGCTCGCCGTGCCGCGG
genomic: CCTGCGCGTTGAGGTGCCCGCTGTGAACCGCGCAGTGCCGTCGGCCGCAGgtgaggcgca ... tgggcaacagCCGCTCCCGTGGCTGCCGCTGCGCCTCTGCCTGCCGCTCGCCGTGCCGCGG
EST: gi|10783488|gb|AV640160.1|AV640160
EST:     CCTGCGCGTTGAGGTGCCCGCTGTGAACCGCGCAGTGCCGTCGGCCGCAG                         CCGCTCCCGTGGCT
genomic: CCTGCGCGTTGAGGTGCCCGCTGTGAACCGCGCAGTGCCGTCGGCCGCAGgtgaggcgca ... tgggcaacagCCGCTCCCGTGGCT
EST: gi|10784426|gb|AV641098.1|AV641098
EST:     CCTGCGCGTTGAGGTGCCCGCTGTGAACCGCGCAGTGCCGTCGGCCGCAG                         CCGCTCCCGTGGCTGCCGCTGCGCCTCTGCCTGCCGCTCGCCGTGCCGCGG
genomic: CCTGCGCGTTGAGGTGCCCGCTGTGAACCGCGCAGTGCCGTCGGCCGCAGgtgaggcgca ... tgggcaacagCCGCTCCCGTGGCTGCCGCTGCGCCTCTGCCTGCCGCTCGCCGTGCCGCGG
EST: gi|10782992|gb|AV639664.1|AV639664
EST:     CCTGCGCGTTGAGGTGCCCGCTGTGAACCGCGCAGTGCCGTCGGCCGCAG                         CCGCTCCCGTGGCTGCCGCTGCGCCTCTGCCTGCCGCTCGCCGTGCCGCGG
genomic: CCTGCGCGTTGAGGTGCCCGCTGTGAACCGCGCAGTGCCGTCGGCCGCAGgtgaggcgca ... tgggcaacagCCGCTCCCGTGGCTGCCGCTGCGCCTCTGCCTGCCGCTCGCCGTGCCGCGG
EST: gi|10784113|gb|AV640785.1|AV640785
EST:     CCTGCGCGTTGAGGTGCCCGCTGTGAACCGCGCAGTGCCGTCGGCCGCAG                         CCGCTCCCGTGGCTGCCGCTGCGCCTCTGCCTGCCGCTCGCCGTGCCGCGG
genomic: CCTGCGCGTTGAGGTGCCCGCTGTGAACCGCGCAGTGCCGTCGGCCGCAGgtgaggcgca ... tgggcaacagCCGCTCCCGTGGCTGCCGCTGCGCCTCTGCCTGCCGCTCGCCGTGCCGCGG
EST: gi|10787070|gb|AV643742.1|AV643742
EST:     CCTGCGCGTTGAGGTGCCCGCTGTGAACCGCGCAGTGCCGTCGGCCGCAG                         CCGCTCCCGTGGCTGCCGCTGCGCCTCTGCCTGCCGCTCGCCGTGCCGCGG
genomic: CCTGCGCGTTGAGGTGCCCGCTGTGAACCGCGCAGTGCCGTCGGCCGCAGgtgaggcgca ... tgggcaacagCCGCTCCCGTGGCTGCCGCTGCGCCTCTGCCTGCCGCTCGCCGTGCCGCGG
EST: gi|10787824|gb|AV644496.1|AV644496
EST:     CCTGCGCGTTGAGGTGCCCGCTGTGAACCGCGCAGTGCCGTCGGCCGCAG                         CCGCTCCCGTGGCTGCCGCTGCGCCTCTGCCTGCCGCTCGCCGTGCCGCGG
genomic: CCTGCGCGTTGAGGTGCCCGCTGTGAACCGCGCAGTGCCGTCGGCCGCAGgtgaggcgca ... tgggcaacagCCGCTCCCGTGGCTGCCGCTGCGCCTCTGCCTGCCGCTCGCCGTGCCGCGG
EST: gi|49466427|gb|BP094340.1|BP094340
EST:     CCTGCGCGTTGAGGTGCCCGCTGTGAACCGCGCAGTGCCGTCGGCCGCAG                         CCGCTCCCGTGGCTGCCGTTGAGCCTTTGCCTGCCGCTCGCCGTGCCGCGG
genomic: CCTGCGCGTTGAGGTGCCCGCTGTGAACCGCGCAGTGCCGTCGGCCGCAGgtgaggcgca ... tgggcaacagCCGCTCCCGTGGCTGCCGCTGCGCCTCTGCCTGCCGCTCGCCGTGCCGCGG
EST: gi|10786131|gb|AV642803.1|AV642803
EST:     CCTGCGCGTTGAGGTGCCCGCTGTGAACCGCGCAGTGCCGTCGGCCGCAG                         CCGCTCCCGTGGCTGCCGCTGCGCCTCTGCCTGCCGCTCGCCGTGCCGCGG
genomic: CCTGCGCGTTGAGGTGCCCGCTGTGAACCGCGCAGTGCCGTCGGCCGCAGgtgaggcgca ... tgggcaacagCCGCTCCCGTGGCTGCCGCTGCGCCTCTGCCTGCCGCTCGCCGTGCCGCGG
EST: gi|10787248|gb|AV643920.1|AV643920
EST:     CCTGCGCGTTGAGGTGCCCGCTGTGAACCGCGCAGTGCCGTCGGCCGCAG                         CCGCTCCCGTGGCTGCCGCTGCGCCTCTGCCTGCCGCTCGCCGTGCCGCGG
genomic: CCTGCGCGTTGAGGTGCCCGCTGTGAACCGCGCAGTGCCGTCGGCCGCAGgtgaggcgca ... tgggcaacagCCGCTCCCGTGGCTGCCGCTGCGCCTCTGCCTGCCGCTCGCCGTGCCGCGG
EST: gi|10786937|gb|AV643609.1|AV643609
EST:     GCGTTGAGGTGCCCGCTGTGAACCGCGCAGTGCCGTCGGCCGCAG                         CCGCTCCCGTGGCTGCCGCTGCGCCTCTGCCTGCCGCTCGCCGTGCCGCGG
genomic: GCGTTGAGGTGCCCGCTGTGAACCGCGCAGTGCCGTCGGCCGCAGgtgaggcgca ... tgggcaacagCCGCTCCCGTGGCTGCCGCTGCGCCTCTGCCTGCCGCTCGCCGTGCCGCGG
EST: gi|10787542|gb|AV644214.1|AV644214
EST:     CCTGCGCGTTGAGGTGCCCGCTGTGAGCCGCGCAGTGGCGTCGGGCGCAG                         CCGGTCCCGTGGCTGGCGCTGCGCCTCTGCCTGGCGCTCGCCGTGCCGCGG
genomic: CCTGCGCGTTGAGGTGCCCGCTGTGAACCGCGCAGTGCCGTCGGCCGCAGgtgaggcgca ... tgggcaacagCCGCTCCCGTGGCTGCCGCTGCGCCTCTGCCTGCCGCTCGCCGTGCCGCGG
EST: gi|49466811|gb|BP094724.1|BP094724
EST:     CCTGCGCGTTGAGGTGCCCGCTGTGAACCGCGCAGTGCCGTCGGCCGCAG                         CCGCTCCCGTGGCTGCCGCTGCGCCTCTGCCTGCCGCTCGCCGTGCCGCGG
genomic: CCTGCGCGTTGAGGTGCCCGCTGTGAACCGCGCAGTGCCGTCGGCCGCAGgtgaggcgca ... tgggcaacagCCGCTCCCGTGGCTGCCGCTGCGCCTCTGCCTGCCGCTCGCCGTGCCGCGG
EST: gi|10788160|gb|AV644832.1|AV644832
EST:     CCTGCGCGTTGAGGTGCCCGCTGTGAACCGCGCAGTGCCGTCGGCCGCAG                         CCGCTCCCGTGGCTGCCGCTGCGCCTCTGCCTGCCGCTCGCCGTGCCGCGG
genomic: CCTGCGCGTTGAGGTGCCCGCTGTGAACCGCGCAGTGCCGTCGGCCGCAGgtgaggcgca ... tgggcaacagCCGCTCCCGTGGCTGCCGCTGCGCCTCTGCCTGCCGCTCGCCGTGCCGCGG
EST: gi|10785772|gb|AV642444.1|AV642444
EST:     CCTGCGCGTTGAGGTGCCCGCTGTGAACCGCGCAGTGCCGTCGGCCGCAG                         CCGCTCCCGTGGCTGCCGCTGCGCCTCTGCCTGCCGCTCGCCGTGCCGCGG
genomic: CCTGCGCGTTGAGGTGCCCGCTGTGAACCGCGCAGTGCCGTCGGCCGCAGgtgaggcgca ... tgggcaacagCCGCTCCCGTGGCTGCCGCTGCGCCTCTGCCTGCCGCTCGCCGTGCCGCGG
EST: gi|10786776|gb|AV643448.1|AV643448
EST:     CCTGCGCGTTGAGGTGCCCGCTGTGAACCGCGCAGTGCCGTCGGCCGCAG                         CCGCTCCCGTGGCTGCCGCTGCGCCTCTGCCTGCCGCTCGCCGTGCCGCGG
genomic: CCTGCGCGTTGAGGTGCCCGCTGTGAACCGCGCAGTGCCGTCGGCCGCAGgtgaggcgca ... tgggcaacagCCGCTCCCGTGGCTGCCGCTGCGCCTCTGCCTGCCGCTCGCCGTGCCGCGG
EST: gi|10791188|gb|AV628554.1|AV628554
EST:     CCTGCGCGTTGAGGTGCCCGCTGTGAACCGCGCAGTGCCGTCGGCCGCAG                         CCGCTCCCGTGGCTGCCGCTGCGCCTCTGCCTGCCGCTCGCCGTGCCGCGG
genomic: CCTGCGCGTTGAGGTGCCCGCTGTGAACCGCGCAGTGCCGTCGGCCGCAGgtgaggcgca ... tgggcaacagCCGCTCCCGTGGCTGCCGCTGCGCCTCTGCCTGCCGCTCGCCGTGCCGCGG
EST: gi|10786864|gb|AV643536.1|AV643536
EST:     CCTGCGCGTTGAGGTGCCCGCTGTGAACCGCGCAGTGCCGTCGGCCGCAG                         CCGCTCCCGTGGCTGCCGCTGCGCCTCTGCCTGCCGCTCGCCGTGCCGCGG
genomic: CCTGCGCGTTGAGGTGCCCGCTGTGAACCGCGCAGTGCCGTCGGCCGCAGgtgaggcgca ... tgggcaacagCCGCTCCCGTGGCTGCCGCTGCGCCTCTGCCTGCCGCTCGCCGTGCCGCGG
EST: gi|10783914|gb|AV640586.1|AV640586
EST:     CCTGCGCGTTGAGGTGCCCGCTGTGAACCGCGCAGTGCCGTCGGCCGCAG                         CCGCTCCCGTGGCTGCCGCTGCGCCTCTGCCTGCCGCTCGCCGTGCCGCGG
genomic: CCTGCGCGTTGAGGTGCCCGCTGTGAACCGCGCAGTGCCGTCGGCCGCAGgtgaggcgca ... tgggcaacagCCGCTCCCGTGGCTGCCGCTGCGCCTCTGCCTGCCGCTCGCCGTGCCGCGG
EST: gi|49469202|gb|BP097063.1|BP097063
EST:     CCTGCGCGTTGAGGTGCCCGCTGTGAACCGCGCAGTGCCGTCGGCCGCAG                         CCGCTCCCGTGGCTGCCGCTGCGCCTCTGCCTGCCGCTCGCCGTGCCGCGG
genomic: CCTGCGCGTTGAGGTGCCCGCTGTGAACCGCGCAGTGCCGTCGGCCGCAGgtgaggcgca ... tgggcaacagCCGCTCCCGTGGCTGCCGCTGCGCCTCTGCCTGCCGCTCGCCGTGCCGCGG
EST: gi|10787865|gb|AV644537.1|AV644537
EST:     CCTGCGCGTTGAGGTGCCCGCTGTGAACCGCGCAGTGCCGTCGGCCGCAG                         CCGCTCCCGTGG
genomic: CCTGCGCGTTGAGGTGCCCGCTGTGAACCGCGCAGTGCCGTCGGCCGCAGgtgaggcgca ... tgggcaacagCCGCTCCCGTGG
EST: gi|10787514|gb|AV644186.1|AV644186
EST:     CCTGCGCGTTGAGGTGCCCGCTGTGAACCGCGCAGTGCCGTCGGCCGCAG                         CCGCTCCCGTGGCTGCCGCTGCGCCTCTGCCTGCCGCTCGCCGTGCCGCGG
genomic: CCTGCGCGTTGAGGTGCCCGCTGTGAACCGCGCAGTGCCGTCGGCCGCAGgtgaggcgca ... tgggcaacagCCGCTCCCGTGGCTGCCGCTGCGCCTCTGCCTGCCGCTCGCCGTGCCGCGG
EST: gi|10783953|gb|AV640625.1|AV640625
EST:     CCTGCGCGTTGAGGTGCCCGCTGTGAACCGCGCAGTGCCGTCGGCCGCAG                         CCGCTCCCGTGGCTGCCGCTGCGCCTCTGCCTGCC
genomic: CCTGCGCGTTGAGGTGCCCGCTGTGAACCGCGCAGTGCCGTCGGCCGCAGgtgaggcgca ... tgggcaacagCCGCTCCCGTGGCTGCCGCTGCGCCTCTGCCTGCC
EST: gi|10787307|gb|AV643979.1|AV643979
EST:     CCTGCGCGTTGAGGTGCCCGCTGTGAACCGCGCAGTGCCGTCGGCCGCAG                         CCGCTCCCGTGGCTGCCGCTGCGCCTCTGCCTGCCGCTCGCCGTGCCGCGG
genomic: CCTGCGCGTTGAGGTGCCCGCTGTGAACCGCGCAGTGCCGTCGGCCGCAGgtgaggcgca ... tgggcaacagCCGCTCCCGTGGCTGCCGCTGCGCCTCTGCCTGCCGCTCGCCGTGCCGCGG
EST: gi|10785156|gb|AV641828.1|AV641828
EST:     CCTGCGCGTTGAGGTGCCCGCTGTGAACCGCGCAGTGCCGTCGGCCGCAG                         CCGCTCCCGTGGCTGCCGCTGCGCCTCTGCCTGCCGCTCGCCGTGCCGCGG
genomic: CCTGCGCGTTGAGGTGCCCGCTGTGAACCGCGCAGTGCCGTCGGCCGCAGgtgaggcgca ... tgggcaacagCCGCTCCCGTGGCTGCCGCTGCGCCTCTGCCTGCCGCTCGCCGTGCCGCGG
EST: gi|10787701|gb|AV644373.1|AV644373
EST:     CCTGCGCGTTGAGGTGCCCGCTGTGAACCGCGCAGTGCCGTCGGCCGCAG                         CCGCTCCCGTGGCTGCCGCTGCGCCTCTGCCTGCCGCTCGCCGTGCCGCGG
genomic: CCTGCGCGTTGAGGTGCCCGCTGTGAACCGCGCAGTGCCGTCGGCCGCAGgtgaggcgca ... tgggcaacagCCGCTCCCGTGGCTGCCGCTGCGCCTCTGCCTGCCGCTCGCCGTGCCGCGG
EST: gi|23360235|gb|BU648055.1|BU648055
EST:     CCTGCGCGTTGAGGTGCCCGCTGTGAACCGCGCAGTGCCGTCGGCCGCAG                         CCGCTCCCGTGGCTGCCGCTGCGCCTCTGCCTGCCGCTCGCCGTGCCGCGG
genomic: CCTGCGCGTTGAGGTGCCCGCTGTGAACCGCGCAGTGCCGTCGGCCGCAGgtgaggcgca ... tgggcaacagCCGCTCCCGTGGCTGCCGCTGCGCCTCTGCCTGCCGCTCGCCGTGCCGCGG

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
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---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
CTACAGAAGATTCAGCGCCAGGCCCAGCGCCAGGCCAGCGCCCAGGCGCCCCTGCGCGTTGAGGTGCCCGCTGTGAACCGCGCAGTGCCGTCGGCCGCAGgtgaggcgcatatgccaggggaacccaatccgtcttgcaaacccgccttctggctgtaagcaatatgcatgtgacatatgtaaagcatttgggccatgac

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