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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCATCAAGTTCCGTATCGCCACCCGCGGCCTACTGGGCCTGAAGAACTCGCTGCTGACCGCCACCCGCGGCCTGGGCGTCATGAACACCCTGTTCCTCGAgtaagtgcgcggccatggcgacccgacgtctactttgctctgtgcagtaaacccagagactgtgcagaagcaagacagcgctgcctggtggctaacctgcggcatcggcccattcctcctcccctgtcctccacag

Basic information

species Chlamydomonas reinhardtii
transcript EDO98397
intron # 13
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|49469481|gb|BP097342.1|BP097342
EST:     CTGCTGACCGCCACCCGCGGCCTGGGCGTCATGAACACCCTGTTCCTCGA                         GTACGCCCCTGTTGCGGGCGAGATTCTGATGCGCGAGAACGGCTCTCTGGT
genomic: CTGCTGACCGCCACCCGCGGCCTGGGCGTCATGAACACCCTGTTCCTCGAgtaagtgcgc ... tcctccacagGTACGCCCCTGTTGCGGGCGAGATTCTGATGCGCGAGAACGGCTCTCTGGT
EST: gi|16437627|gb|BM002847.1|BM002847
EST:     CTGCTGACCGCCACCCGCGGCCTGGGCGTCATGAACACCCTGTTCCTCGA                         GTACGCCCCTGTTGCGGGCGAGATTCTGATGCGCGAGAACGGCTCTCTGGT
genomic: CTGCTGACCGCCACCCGCGGCCTGGGCGTCATGAACACCCTGTTCCTCGAgtaagtgcgc ... tcctccacagGTACGCCCCTGTTGCGGGCGAGATTCTGATGCGCGAGAACGGCTCTCTGGT
EST: gi|49469480|gb|BP097341.1|BP097341
EST:     CTGCTGACCGCCACCCGCGGCCTGGGCGTCATGAACACCCTGTTCCTCGA                         GTACGCCCCTGTTGCGGGCGAGATTCTGATGCGCGAGAACGGCTCTCTGGT
genomic: CTGCTGACCGCCACCCGCGGCCTGGGCGTCATGAACACCCTGTTCCTCGAgtaagtgcgc ... tcctccacagGTACGCCCCTGTTGCGGGCGAGATTCTGATGCGCGAGAACGGCTCTCTGGT
EST: gi|10777763|gb|AV634443.1|AV634443
EST:     CTGCTGACCGCCACCCGCGGCCTGGGCGTCATGAACACCCTGTTCCTCGA                         GTACGCCCCTGTTGCGGGCGAGATTCTGATGCGCGAGAACGGCTCTCTGGT
genomic: CTGCTGACCGCCACCCGCGGCCTGGGCGTCATGAACACCCTGTTCCTCGAgtaagtgcgc ... tcctccacagGTACGCCCCTGTTGCGGGCGAGATTCTGATGCGCGAGAACGGCTCTCTGGT
EST: gi|14228507|gb|BG847323.1|BG847323
EST:     TGCTGACCGCTCACCCGCGGCCTGGGCGTCATGAACACCCTGTTCCTCGA                         GTACGCCCCTGTTGCGGGCGAGATTCTGATGCGCGAGAACGGCTCTCTGGT
genomic: TGCTGACCGC-CACCCGCGGCCTGGGCGTCATGAACACCCTGTTCCTCGAgtaagtgcgc ... tcctccacagGTACGCCCCTGTTGCGGGCGAGATTCTGATGCGCGAGAACGGCTCTCTGGT
EST: gi|161805760|gb|FC091427.1|FC091427
EST:     CTGCTGACCGCCACCCGCGGCCTGGGCGTCATGAACACCCTGTTCCTCGA                         GTACGCCCCTGTTGCGGGCGAGATTCTGATGCGCGAGAACGGCTCCCTGGT
genomic: CTGCTGACCGCCACCCGCGGCCTGGGCGTCATGAACACCCTGTTCCTCGAgtaagtgcgc ... tcctccacagGTACGCCCCTGTTGCGGGCGAGATTCTGATGCGCGAGAACGGCTCTCTGGT
EST: gi|6544850|gb|AV390634.1|AV390634
EST:     CTGCTGACCGCCACCCGCGGCCTGGGCGTCATGAACACCCTGTTCCTCGA                         GTACGCCCCTGTTGCGGGCGAGATTCTGATGCGCGAGAACGGCTCTCTGGT
genomic: CTGCTGACCGCCACCCGCGGCCTGGGCGTCATGAACACCCTGTTCCTCGAgtaagtgcgc ... tcctccacagGTACGCCCCTGTTGCGGGCGAGATTCTGATGCGCGAGAACGGCTCTCTGGT
EST: gi|10780167|gb|AV636847.1|AV636847
EST:     CTGCTGACCGCCACCCGCGGCCTGGGCGTCATGAACACCCTGTTCCTCGA                         GTACGCCCCTGTTGCGGGCGAGATTCTGATGCGCGAGAACGGCTCTCTGGT
genomic: CTGCTGACCGCCACCCGCGGCCTGGGCGTCATGAACACCCTGTTCCTCGAgtaagtgcgc ... tcctccacagGTACGCCCCTGTTGCGGGCGAGATTCTGATGCGCGAGAACGGCTCTCTGGT
EST: gi|10777536|gb|AV634216.1|AV634216
EST:     CTGCTGACCGCCACCCGCGGCCTGGGCGTCATGAACACCCTGTTCCTCGA                         GTACGCCCCTGTTGCGGGCGAGATTCTGATGCGCGAGAACGGCTCTCTGGT
genomic: CTGCTGACCGCCACCCGCGGCCTGGGCGTCATGAACACCCTGTTCCTCGAgtaagtgcgc ... tcctccacagGTACGCCCCTGTTGCGGGCGAGATTCTGATGCGCGAGAACGGCTCTCTGGT
EST: gi|161807860|gb|FC098973.1|FC098973
EST:     CTGCTGACCGCCACCCGCGGCCTGGGCGTCATGAACACCCTGTTCCTCGA                         GTACGCCCCTGTTGCGGGCGAGATTCTGATGCGCGAGAACGGCTCCCTGGT
genomic: CTGCTGACCGCCACCCGCGGCCTGGGCGTCATGAACACCCTGTTCCTCGAgtaagtgcgc ... tcctccacagGTACGCCCCTGTTGCGGGCGAGATTCTGATGCGCGAGAACGGCTCTCTGGT
EST: gi|10771122|gb|AV621945.1|AV621945
EST:     CTGCTGACCGCCACCCGCGGCCTGGGCGTCATGAACACCCTGTTCCTCGA                         GTACGCCCCTGTTGCGGGCGAGATTCTGATGCGCGAGAACGGCTCTCTGGT
genomic: CTGCTGACCGCCACCCGCGGCCTGGGCGTCATGAACACCCTGTTCCTCGAgtaagtgcgc ... tcctccacagGTACGCCCCTGTTGCGGGCGAGATTCTGATGCGCGAGAACGGCTCTCTGGT
EST: gi|10778940|gb|AV635620.1|AV635620
EST:     CTGCTGACCGCCACCCGCGGCCTGGGCGTCATGAACACCCTGTTCCTCGA                         GTACGCCCCTGTTGCGGGCGAGATTCTGATGCGCGAGAACGGCTCTCTGGT
genomic: CTGCTGACCGCCACCCGCGGCCTGGGCGTCATGAACACCCTGTTCCTCGAgtaagtgcgc ... tcctccacagGTACGCCCCTGTTGCGGGCGAGATTCTGATGCGCGAGAACGGCTCTCTGGT
EST: gi|10771584|gb|AV622407.1|AV622407
EST:     CTGCTGACCGCCACCCGCGGCCTGGGCGTCATGAACACCCTGTTCCTCGA                         GTACGCCCCTGTTGCGGGCGAGATTCTGATGCGCGAGAACGGCTCTCTGGT
genomic: CTGCTGACCGCCACCCGCGGCCTGGGCGTCATGAACACCCTGTTCCTCGAgtaagtgcgc ... tcctccacagGTACGCCCCTGTTGCGGGCGAGATTCTGATGCGCGAGAACGGCTCTCTGGT
EST: gi|49469053|gb|BP096914.1|BP096914
EST:     CTGCTGACCGCCACCCGCGGCCTGGGCGTCATGAACACCCTGTTCCTCGA                         GTACGCCCCTGTTGCGGGCGAGATTCTGATGCGCGAGAACGGCTCTCTGGT
genomic: CTGCTGACCGCCACCCGCGGCCTGGGCGTCATGAACACCCTGTTCCTCGAgtaagtgcgc ... tcctccacagGTACGCCCCTGTTGCGGGCGAGATTCTGATGCGCGAGAACGGCTCTCTGGT
EST: gi|161795524|gb|FC079708.1|FC079708
EST:     CTGCTGACCGCCACCCGCGGCCTGGGCGTCATGAACACCCTGTTCCTCGA                         GTACGCCCCTGTTGCGGGCGAGATTCTGATGCGCGAGAACGGCTCCCTGGT
genomic: CTGCTGACCGCCACCCGCGGCCTGGGCGTCATGAACACCCTGTTCCTCGAgtaagtgcgc ... tcctccacagGTACGCCCCTGTTGCGGGCGAGATTCTGATGCGCGAGAACGGCTCTCTGGT
EST: gi|9210398|gb|BE337313.1|BE337313
EST:     CTGCTGACCGCCACCCGCGGCCTGGGCGTCATGAACACCCTGTTCCTCGA                         GTACGCCCCTGTTGCGGGCGAGATTCTGATGCGCGAGAACGGCTCTCTGGT
genomic: CTGCTGACCGCCACCCGCGGCCTGGGCGTCATGAACACCCTGTTCCTCGAgtaagtgcgc ... tcctccacagGTACGCCCCTGTTGCGGGCGAGATTCTGATGCGCGAGAACGGCTCTCTGGT
EST: gi|161792685|gb|FC080665.1|FC080665
EST:     CTGCTGACCGCCACCCGCGGCCTGGGCGTCATGAACACCCTGTTCCTCGA                         GTACGCCCCTGTTGCGGGCGAGATTCTGATGCGCGAGAACGGCTCCCTGGT
genomic: CTGCTGACCGCCACCCGCGGCCTGGGCGTCATGAACACCCTGTTCCTCGAgtaagtgcgc ... tcctccacagGTACGCCCCTGTTGCGGGCGAGATTCTGATGCGCGAGAACGGCTCTCTGGT
EST: gi|10776254|gb|AV632934.1|AV632934
EST:     TGCTGACCGCCACCCGCGGCCTGGGCTGTCATGAACACCCTGTTCCTCGA                         GTACGCCCCTGTTGCGGGCGAGATTCTGATGCGCGAGAACGGATCTCTGGT
genomic: TGCTGACCGCCACCCGCGGCCTGGGC-GTCATGAACACCCTGTTCCTCGAgtaagtgcgc ... tcctccacagGTACGCCCCTGTTGCGGGCGAGATTCTGATGCGCGAGAACGGCTCTCTGGT
EST: gi|10777611|gb|AV634291.1|AV634291
EST:     CTGCTGACCGCCACCCGCGGCCTGGGCGTCATGAACACCCTGTTCCTCGA                         GTACGCCCCTGTTGCGGGCGAGATTCTGATGCGCGAGAACGGCTCTCTGGT
genomic: CTGCTGACCGCCACCCGCGGCCTGGGCGTCATGAACACCCTGTTCCTCGAgtaagtgcgc ... tcctccacagGTACGCCCCTGTTGCGGGCGAGATTCTGATGCGCGAGAACGGCTCTCTGGT
EST: gi|22068521|gb|BQ818429.1|BQ818429
EST:     GCCACCCGCGGCCTGGGCGTCATGAACACCCTGTTCCTCGA                         GTACGCCCCTGTTGCGGGCGAGATTCTGATGCGCGAGAACGGCTCTCTGGT
genomic: GCCACCCGCGGCCTGGGCGTCATGAACACCCTGTTCCTCGAgtaagtgcgc ... tcctccacagGTACGCCCCTGTTGCGGGCGAGATTCTGATGCGCGAGAACGGCTCTCTGGT
EST: gi|10779535|gb|AV636215.1|AV636215
EST:     CTGCTGACCGCCACCCGCGGCCTGGGCGTCATGAACACCCTGTTCCTCGA                         GTACGCCCCTGTTGCGGGCGAGATTCTGATGCGCGAGAA
genomic: CTGCTGACCGCCACCCGCGGCCTGGGCGTCATGAACACCCTGTTCCTCGAgtaagtgcgc ... tcctccacagGTACGCCCCTGTTGCGGGCGAGATTCTGATGCGCGAGAA