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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...tgactaaggtggcttggttgaacaacaaggagctggaccgcgtctagcttctttgtgaacatcacattgaccccctattgcctggctcttgtgtttgcagCGTGGAGCCCGGTGAGACCTCGGACTCGTTCGTGGTGTCTGGCCGCGGTACTCTGCACCTGGGTATCCTCATTGAGAACATGCGTCGTGAGGGCTACGAG

Basic information

species Chlamydomonas reinhardtii
transcript EDO98397
intron # 11
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|34986729|gb|CF560646.1|CF560646
EST:     AACCTGAAGGACCGCCTGGATCGCGAGCTGGAGCGTAACCTGGCGCTGCG                         CGTGGAGCCCGGTGAGACCTCGGACTCGTTCGTGGTGTCTGGCCGCGGTAC
genomic: AACCTGAAGGACCGCCTGGATCGCGAGCTGGAGCGTAACCTGGCGCTGCGgtgagacacc ... gtgtttgcagCGTGGAGCCCGGTGAGACCTCGGACTCGTTCGTGGTGTCTGGCCGCGGTAC
EST: gi|34986731|gb|CF560648.1|CF560648
EST:     AACCTGAAGGACCGCCTGGATCGCGAGCTGGAGCGTAACCTGGCGCTGCG                         CGTGGAGCCCGGTGAGACCTCGGACTCGTTCGTGGTGTCTGGCCGCGGTAC
genomic: AACCTGAAGGACCGCCTGGATCGCGAGCTGGAGCGTAACCTGGCGCTGCGgtgagacacc ... gtgtttgcagCGTGGAGCCCGGTGAGACCTCGGACTCGTTCGTGGTGTCTGGCCGCGGTAC
EST: gi|34991709|gb|CF565626.1|CF565626
EST:     AACCTGAAGGACCGCCTGGATCGCGAGCTGGAGCGTAACCTGGCGCTGCG                         CGTGGAGCCCGGTGAGACCTCGGACTCGTTCGTGGTGTCTGGCCGCGGTAC
genomic: AACCTGAAGGACCGCCTGGATCGCGAGCTGGAGCGTAACCTGGCGCTGCGgtgagacacc ... gtgtttgcagCGTGGAGCCCGGTGAGACCTCGGACTCGTTCGTGGTGTCTGGCCGCGGTAC
EST: gi|34983261|gb|CF557178.1|CF557178
EST:     CCGCCTGGATCGCGAGCTGGAGCGTAACCTGGCGCTGCG                         CGTGGAGCCCGGTGAGACCTCGGACTCGTTCGTGGTGTCTGGCCGCGGTAC
genomic: CCGCCTGGATCGCGAGCTGGAGCGTAACCTGGCGCTGCGgtgagacacc ... gtgtttgcagCGTGGAGCCCGGTGAGACCTCGGACTCGTTCGTGGTGTCTGGCCGCGGTAC
EST: gi|16437627|gb|BM002847.1|BM002847
EST:     CGCGAGCTGGAGCGTAACCTGGCGCTGCG                         CGTGGAGCCCGGTGAGACCTCGGACTCGTTCGTGGTGTCTGGCCGCGGTAC
genomic: CGCGAGCTGGAGCGTAACCTGGCGCTGCGgtgagacacc ... gtgtttgcagCGTGGAGCCCGGTGAGACCTCGGACTCGTTCGTGGTGTCTGGCCGCGGTAC
EST: gi|10780942|gb|AV637622.1|AV637622
EST:     AACCTGAAGGACCGCCTGGATCGCGAGCTGGAGCGTAACCTGGCGCTGCG                         CGTGGAGCCCGGTGAGACCTCGGACTCGTTCGTGGTGTCTGGCCGCGGTAC
genomic: AACCTGAAGGACCGCCTGGATCGCGAGCTGGAGCGTAACCTGGCGCTGCGgtgagacacc ... gtgtttgcagCGTGGAGCCCGGTGAGACCTCGGACTCGTTCGTGGTGTCTGGCCGCGGTAC
EST: gi|34983260|gb|CF557177.1|CF557177
EST:     CCGCCTGGATCGCGAGCTGGAGCGTAACCTGGCGCTGCG                         CGTGGAGCCCGGTGAGACCTCGGACTCGTTCGTGGTGTCTGGCCGCGGTAC
genomic: CCGCCTGGATCGCGAGCTGGAGCGTAACCTGGCGCTGCGgtgagacacc ... gtgtttgcagCGTGGAGCCCGGTGAGACCTCGGACTCGTTCGTGGTGTCTGGCCGCGGTAC
EST: gi|49461995|gb|BP089908.1|BP089908
EST:     AACCTGAAGGACCGCCTGGATCGCGAGCTGGAGCGTAACCTGGCGCTGCG                         CGTGGAGCCCGGTGAGACCTCGGACTCGTTCGTGGTGTCTGGCCGCGGTAC
genomic: AACCTGAAGGACCGCCTGGATCGCGAGCTGGAGCGTAACCTGGCGCTGCGgtgagacacc ... gtgtttgcagCGTGGAGCCCGGTGAGACCTCGGACTCGTTCGTGGTGTCTGGCCGCGGTAC
EST: gi|34988866|gb|CF562783.1|CF562783
EST:     AACCTGAAGGACCGCCTGGATCGCGAGCTGGAGCGTAACCTGGCGCTGCG                         CGTGGAGCCCGGTGAGACCTCGGACTCGTTCGTGGTGTCTGGCCGCGGTAC
genomic: AACCTGAAGGACCGCCTGGATCGCGAGCTGGAGCGTAACCTGGCGCTGCGgtgagacacc ... gtgtttgcagCGTGGAGCCCGGTGAGACCTCGGACTCGTTCGTGGTGTCTGGCCGCGGTAC
EST: gi|6541003|gb|AV386787.1|AV386787
EST:     AACCTGAAGGACCGCCTGGATCGCGAGCTGGAGCGTAACCTGGCGCTGCG                         CGTGGAGCCCGGTGAGACCTCGGACTCGTTCGTGGTGTCTGGCCGCGGTAC
genomic: AACCTGAAGGACCGCCTGGATCGCGAGCTGGAGCGTAACCTGGCGCTGCGgtgagacacc ... gtgtttgcagCGTGGAGCCCGGTGAGACCTCGGACTCGTTCGTGGTGTCTGGCCGCGGTAC
EST: gi|34987965|gb|CF561882.1|CF561882
EST:     AACCTGAAGGACCGCCTGGATCGCGAGCTGGAGCGTAACCTGGCGCTGCG                         CGTGGAGCCCGGTGAGACCTCGGACTCGTTCGTGGTGTCTGGCCGCGGTAC
genomic: AACCTGAAGGACCGCCTGGATCGCGAGCTGGAGCGTAACCTGGCGCTGCGgtgagacacc ... gtgtttgcagCGTGGAGCCCGGTGAGACCTCGGACTCGTTCGTGGTGTCTGGCCGCGGTAC
EST: gi|34990038|gb|CF563955.1|CF563955
EST:     AACCTGAAGGACCGCCTGGATCGCGAGCTGGAGCGTAACCTGGCGCTGCG                         CGTGGAGCCCGGTGAGACCTCGGACTCGTTCGTGGTGTCTGGCCGCGGTAC
genomic: AACCTGAAGGACCGCCTGGATCGCGAGCTGGAGCGTAACCTGGCGCTGCGgtgagacacc ... gtgtttgcagCGTGGAGCCCGGTGAGACCTCGGACTCGTTCGTGGTGTCTGGCCGCGGTAC
EST: gi|34989751|gb|CF563668.1|CF563668
EST:     AACCTGAAGGACCGCCTGGATCGCGAGCTGGAGCGTAACCTGGCGCTGCG                         CGTGGAGCCCGGTGAGACCTCGGACTCGTTCGTGGTGTCTGGCCGCGGTAC
genomic: AACCTGAAGGACCGCCTGGATCGCGAGCTGGAGCGTAACCTGGCGCTGCGgtgagacacc ... gtgtttgcagCGTGGAGCCCGGTGAGACCTCGGACTCGTTCGTGGTGTCTGGCCGCGGTAC
EST: gi|34988865|gb|CF562782.1|CF562782
EST:     AACCTGAAGGACCGCCTGGATCGCGAGCTGGAGCGTAACCTGGCGCTGCG                         CGTGGAGCCCGGTGAGACCTCGGACTCGTTCGTGGTGTCTGGCCGCGGTAC
genomic: AACCTGAAGGACCGCCTGGATCGCGAGCTGGAGCGTAACCTGGCGCTGCGgtgagacacc ... gtgtttgcagCGTGGAGCCCGGTGAGACCTCGGACTCGTTCGTGGTGTCTGGCCGCGGTAC
EST: gi|14239935|gb|BG858751.1|BG858751
EST:     AACCTGAAGGACCGCCTGGATCGCGAGCTGGAGCGTAACCTGGCGCTGCG                         CGTGGAGCCCGGTGAGACCTCGGACTCGTTCGTGGTGTCTGGCCGCGGTAC
genomic: AACCTGAAGGACCGCCTGGATCGCGAGCTGGAGCGTAACCTGGCGCTGCGgtgagacacc ... gtgtttgcagCGTGGAGCCCGGTGAGACCTCGGACTCGTTCGTGGTGTCTGGCCGCGGTAC
EST: gi|14240417|gb|BG859233.1|BG859233
EST:     AACCTGAAGGACCGCCTGGATCGCGAGCTGGAGCGTAACCTGGCGCTGCG                         CGTGGAGCCCGGTGAGACCTCGGACTCGTTCGTGGTGTCTGGCCGCGGTAC
genomic: AACCTGAAGGACCGCCTGGATCGCGAGCTGGAGCGTAACCTGGCGCTGCGgtgagacacc ... gtgtttgcagCGTGGAGCCCGGTGAGACCTCGGACTCGTTCGTGGTGTCTGGCCGCGGTAC
EST: gi|34983932|gb|CF557849.1|CF557849
EST:     AACCTGAAGGACCGCCTGGATCGCGAGCTGGAGCGTAACCTGGCGCTGCG                         CGTGGAGCCCGGTGAGACCTCGGACTCGTTCGTGGTGTCTGGCCGCGGTAC
genomic: AACCTGAAGGACCGCCTGGATCGCGAGCTGGAGCGTAACCTGGCGCTGCGgtgagacacc ... gtgtttgcagCGTGGAGCCCGGTGAGACCTCGGACTCGTTCGTGGTGTCTGGCCGCGGTAC
EST: gi|10775954|gb|AV632634.1|AV632634
EST:     AACCTGAAGGACCGCCTGGATCGCGAGCTGGAGCGTAACCTGGCGCTGCG                         CGTGGAGCCCGGTGAGACCTCGGACTCGTTCGTGGTGTCTGGCCGCGGTAC
genomic: AACCTGAAGGACCGCCTGGATCGCGAGCTGGAGCGTAACCTGGCGCTGCGgtgagacacc ... gtgtttgcagCGTGGAGCCCGGTGAGACCTCGGACTCGTTCGTGGTGTCTGGCCGCGGTAC
EST: gi|10128080|gb|BE726656.1|BE726656
EST:     AACCTGAAGGACCGCCTGGATCGCGAGCTGGAGCGTAACCTGGCGCTGCG                         CGTGGAGCCCGGTGAGACCTCGGACTCGTTCGTGGTGTCTGGCCGCGGTAC
genomic: AACCTGAAGGACCGCCTGGATCGCGAGCTGGAGCGTAACCTGGCGCTGCGgtgagacacc ... gtgtttgcagCGTGGAGCCCGGTGAGACCTCGGACTCGTTCGTGGTGTCTGGCCGCGGTAC
EST: gi|34988465|gb|CF562382.1|CF562382
EST:     AACCTGAAGGACCGCCTGGATCGCGAGCTGGAGCGTAACCTGGCGCTGCG                         CGTGGAGCCCGGTGAGACCTCGGACTCGTTCGTGGTGTCTGGCCGCGGTAC
genomic: AACCTGAAGGACCGCCTGGATCGCGAGCTGGAGCGTAACCTGGCGCTGCGgtgagacacc ... gtgtttgcagCGTGGAGCCCGGTGAGACCTCGGACTCGTTCGTGGTGTCTGGCCGCGGTAC
EST: gi|34986430|gb|CF560347.1|CF560347
EST:     AACCTGAAGGACCCCCTGGATCGCGAGCTGGAGCGTAACCTGGCGCTGCG                         CGTGGAGCCCGGTGAGACCTCGGACTCGTTCGTGGTGTCTGGCCGCGGTAC
genomic: AACCTGAAGGACCGCCTGGATCGCGAGCTGGAGCGTAACCTGGCGCTGCGgtgagacacc ... gtgtttgcagCGTGGAGCCCGGTGAGACCTCGGACTCGTTCGTGGTGTCTGGCCGCGGTAC
EST: gi|34983262|gb|CF557179.1|CF557179
EST:     CCGCCTGGATCGCGAGCTGGAGCGTAACCTGGCGCTGCG                         CGTGGAGCCCGGTGAGACCTCGGACTCGTTCGTGGTGTCTGGCCGCGGTAC
genomic: CCGCCTGGATCGCGAGCTGGAGCGTAACCTGGCGCTGCGgtgagacacc ... gtgtttgcagCGTGGAGCCCGGTGAGACCTCGGACTCGTTCGTGGTGTCTGGCCGCGGTAC
EST: gi|34986185|gb|CF560102.1|CF560102
EST:     AACCTGAAGGACCGCCTGGATCGCGAGCTGGAGCGTAACCTGGCGCTGCG                         CGTGGAGCCCGGTGAGACCTCGGACTCGTTCGTGGTGTCTGGCCGCGGTAC
genomic: AACCTGAAGGACCGCCTGGATCGCGAGCTGGAGCGTAACCTGGCGCTGCGgtgagacacc ... gtgtttgcagCGTGGAGCCCGGTGAGACCTCGGACTCGTTCGTGGTGTCTGGCCGCGGTAC
EST: gi|34987979|gb|CF561896.1|CF561896
EST:     AACCTGAAGGACCGCCTGGATCGCGAGCTGGAGCGTAACCTGGCGCTGCG                         CGTGGAGCCCGGTGAGACCTCGGACTCGTTCGTGGTGTCTGGCCGCGGTAC
genomic: AACCTGAAGGACCGCCTGGATCGCGAGCTGGAGCGTAACCTGGCGCTGCGgtgagacacc ... gtgtttgcagCGTGGAGCCCGGTGAGACCTCGGACTCGTTCGTGGTGTCTGGCCGCGGTAC
EST: gi|10775220|gb|AV631900.1|AV631900
EST:     AACCTGAAGGACCGCCTGGATCGCGAGCTGGAGCGTAACCTGGCGCTGCG                         CGTGGAGCCCGGTGAGACCTCGGACTCGTTCGTGGTGTCTGGCCGCGGTAC
genomic: AACCTGAAGGACCGCCTGGATCGCGAGCTGGAGCGTAACCTGGCGCTGCGgtgagacacc ... gtgtttgcagCGTGGAGCCCGGTGAGACCTCGGACTCGTTCGTGGTGTCTGGCCGCGGTAC
EST: gi|34983874|gb|CF557791.1|CF557791
EST:     AACCTGAAGGACCGCCTGGATCGCGAGCTGGAGCGTAACCTGGCGCTGCG                         CGTGGAGCCCGGTGAGACCTCGGACTCGTTCCTGGTGTCTGGACGACG-TA
genomic: AACCTGAAGGACCGCCTGGATCGCGAGCTGGAGCGTAACCTGGCGCTGCGgtgagacacc ... gtgtttgcagCGTGGAGCCCGGTGAGACCTCGGACTCGTTCGTGGTGTCTGGCCG-CGGTA
EST: gi|34982136|gb|CF556053.1|CF556053
EST:     AACCTGAAGGACCGCCTGGATCGCGAGCTGGAGCGTAACCTGGCGCTGCG                         CGTGGAGCCCGGTGAGACCTCGGACTCGTTCGTGGTGTCTGGCCGCGGTAC
genomic: AACCTGAAGGACCGCCTGGATCGCGAGCTGGAGCGTAACCTGGCGCTGCGgtgagacacc ... gtgtttgcagCGTGGAGCCCGGTGAGACCTCGGACTCGTTCGTGGTGTCTGGCCGCGGTAC
EST: gi|34986407|gb|CF560324.1|CF560324
EST:     AACCTGAAGGACCGCCTGGATCGCGAGCTGGAGCGTAACCTGGCGCTGCG                         CGTGGAGCCCGGTGAGACCTCGGACTCGTTCGTGGTGTCTGGCCGCGGTAC
genomic: AACCTGAAGGACCGCCTGGATCGCGAGCTGGAGCGTAACCTGGCGCTGCGgtgagacacc ... gtgtttgcagCGTGGAGCCCGGTGAGACCTCGGACTCGTTCGTGGTGTCTGGCCGCGGTAC
EST: gi|34988276|gb|CF562193.1|CF562193
EST:     AACCTGAAGGACCGCCTGGATCGCGAGCTGGAGCGTAACCTGGCGCTGCG                         CGTGGAGCCCGGTGAGACCTCGGACTCGTTCGTGGTGTCTGGCCGCGGTAC
genomic: AACCTGAAGGACCGCCTGGATCGCGAGCTGGAGCGTAACCTGGCGCTGCGgtgagacacc ... gtgtttgcagCGTGGAGCCCGGTGAGACCTCGGACTCGTTCGTGGTGTCTGGCCGCGGTAC
EST: gi|161807860|gb|FC098973.1|FC098973
EST:     AACCTGAAGGACCGCCTGGATCGCGAGCTGGAGCGCAACCTGGCGCTGCG                         CGTGGAGCCCGGTGAGACCTCGGACTCGTTCGTGGTGTCTGGCCGCGGTAC
genomic: AACCTGAAGGACCGCCTGGATCGCGAGCTGGAGCGTAACCTGGCGCTGCGgtgagacacc ... gtgtttgcagCGTGGAGCCCGGTGAGACCTCGGACTCGTTCGTGGTGTCTGGCCGCGGTAC
EST: gi|6549469|gb|AV395253.1|AV395253
EST:     AACCTGAAGGACCGCCTGGATCGCGAGCTGGAGCGTAACCTGGCGCTGCG                         CGTGGAGCCCGGTGAGACCTCGGACTCGTTCGTGGTGTCTGGCCGCGGTAC
genomic: AACCTGAAGGACCGCCTGGATCGCGAGCTGGAGCGTAACCTGGCGCTGCGgtgagacacc ... gtgtttgcagCGTGGAGCCCGGTGAGACCTCGGACTCGTTCGTGGTGTCTGGCCGCGGTAC
EST: gi|7686797|gb|AW757445.1|AW757445
EST:     AACCTGAAGGACCGCCTGGATCGCGAGCTGGAGCGTAACCTGGCGCTGCG                         CGTGGAGCCCGGTGAGACCTCGGACTCGTTCGTGGTGTCTGGCCGCGGTAC
genomic: AACCTGAAGGACCGCCTGGATCGCGAGCTGGAGCGTAACCTGGCGCTGCGgtgagacacc ... gtgtttgcagCGTGGAGCCCGGTGAGACCTCGGACTCGTTCGTGGTGTCTGGCCGCGGTAC
EST: gi|34987294|gb|CF561211.1|CF561211
EST:     AACCTGAAGGACCGCCTGGATCGCGAGCTGGAGCGTAACCTGGCGCTGCG                         CGTGGAGCCCGGTGAGACCTCGGACTCGTTCGTGGTGTCTGGCCGCGGTAC
genomic: AACCTGAAGGACCGCCTGGATCGCGAGCTGGAGCGTAACCTGGCGCTGCGgtgagacacc ... gtgtttgcagCGTGGAGCCCGGTGAGACCTCGGACTCGTTCGTGGTGTCTGGCCGCGGTAC
EST: gi|34983872|gb|CF557789.1|CF557789
EST:     AACCTGAAGGACCGCCTGGATCGCGAGCTGGAGCGTAACCTGGCGCTGCG                         CGTGGAGCCCGGTGAGACCTCGGACTCGTTCGTGGTGTCTGGCCGCGGTAC
genomic: AACCTGAAGGACCGCCTGGATCGCGAGCTGGAGCGTAACCTGGCGCTGCGgtgagacacc ... gtgtttgcagCGTGGAGCCCGGTGAGACCTCGGACTCGTTCGTGGTGTCTGGCCGCGGTAC
EST: gi|34985244|gb|CF559161.1|CF559161
EST:     AACCTGAAGGACCGCCTGGATCGCGAGCTGGAGCGTAACCTGGCGCTGCG                         CGTGGAGCCCGGTGAGACCTCGGACTCGTTCGTGGTGTCTGGCCGCGGTAC
genomic: AACCTGAAGGACCGCCTGGATCGCGAGCTGGAGCGTAACCTGGCGCTGCGgtgagacacc ... gtgtttgcagCGTGGAGCCCGGTGAGACCTCGGACTCGTTCGTGGTGTCTGGCCGCGGTAC
EST: gi|34989750|gb|CF563667.1|CF563667
EST:     AACCTGAAGGACCGCCTGGATCGCGAGCTGGAGCGTAACCTGGCGCTGCG                         CGTGGAGCCCGGTGAGACCTCGGACTCGTTCGTGGTGTCTGGCCGCGGTAC
genomic: AACCTGAAGGACCGCCTGGATCGCGAGCTGGAGCGTAACCTGGCGCTGCGgtgagacacc ... gtgtttgcagCGTGGAGCCCGGTGAGACCTCGGACTCGTTCGTGGTGTCTGGCCGCGGTAC
EST: gi|34988464|gb|CF562381.1|CF562381
EST:     AACCTGAAGGACCGCCTGGATCGCGAGCTGGAGCGTAACCTGGCGCTGCG                         CGTGGAGCCCGGTGAGACCTCGGACTCGTTCGTGGTGTCTGGCCGCGGTAC
genomic: AACCTGAAGGACCGCCTGGATCGCGAGCTGGAGCGTAACCTGGCGCTGCGgtgagacacc ... gtgtttgcagCGTGGAGCCCGGTGAGACCTCGGACTCGTTCGTGGTGTCTGGCCGCGGTAC
EST: gi|34983792|gb|CF557709.1|CF557709
EST:     AACCTGAAGGACCGCCTGGATCGCGAGCTGGAGCGTAACCTGGCGCTGCG                         CGTGGAGCCCGGTGAGACCTCGGACTCGTTCGTGGTGTCTGGCCGCGGTAC
genomic: AACCTGAAGGACCGCCTGGATCGCGAGCTGGAGCGTAACCTGGCGCTGCGgtgagacacc ... gtgtttgcagCGTGGAGCCCGGTGAGACCTCGGACTCGTTCGTGGTGTCTGGCCGCGGTAC
EST: gi|34982603|gb|CF556520.1|CF556520
EST:     AACCTGAAGGACCGCCTGGATCGCGAGCTGGAGCGTAACCTGGCGCTGCG                         CGTGGAGCCCGGTGAGACCTCGGACTCGTTCGTGGTGTCTGGCCGCGGTAC
genomic: AACCTGAAGGACCGCCTGGATCGCGAGCTGGAGCGTAACCTGGCGCTGCGgtgagacacc ... gtgtttgcagCGTGGAGCCCGGTGAGACCTCGGACTCGTTCGTGGTGTCTGGCCGCGGTAC
EST: gi|49462696|gb|BP090609.1|BP090609
EST:     AACCTGAAGGACCGCCTGGATCGCGAGCTGGAGCGTAACCTGGCGCTGCG                         CGTGGAGCCCGGTGAGACCTCGGACTCGTTCGTGGTGTCTGGCCGCGGTAC
genomic: AACCTGAAGGACCGCCTGGATCGCGAGCTGGAGCGTAACCTGGCGCTGCGgtgagacacc ... gtgtttgcagCGTGGAGCCCGGTGAGACCTCGGACTCGTTCGTGGTGTCTGGCCGCGGTAC
EST: gi|34983794|gb|CF557711.1|CF557711
EST:     AACCTGAAGGACCGCCTGGATCGCGAGCTGGAGCGTAACCTGGCGCTGCG                         CGTGGAGCCCGGTGAGACCTCGGACTCGTTCGTGGTGTCTGGCCGCGGTAC
genomic: AACCTGAAGGACCGCCTGGATCGCGAGCTGGAGCGTAACCTGGCGCTGCGgtgagacacc ... gtgtttgcagCGTGGAGCCCGGTGAGACCTCGGACTCGTTCGTGGTGTCTGGCCGCGGTAC
EST: gi|34982135|gb|CF556052.1|CF556052
EST:     AACCTGAAGGACCGCCTGGATCGCGAGCTGGAGCGTAACCTGGCGCTGCG                         CGTGGAGCCCGGTGAGACCTCGGACTCGTTCGTGGTGTCTGGCCGCGGTAC
genomic: AACCTGAAGGACCGCCTGGATCGCGAGCTGGAGCGTAACCTGGCGCTGCGgtgagacacc ... gtgtttgcagCGTGGAGCCCGGTGAGACCTCGGACTCGTTCGTGGTGTCTGGCCGCGGTAC
EST: gi|34983873|gb|CF557790.1|CF557790
EST:     AACCTGAAGGACCGCCTGGATCGCGAGCTGGAGCGTAACCTGGCGCTGCG                         CGTGGAGCCCGGTGAGACCTCGGACTCGTTCGTGGTGTCTGGCCGCGGTAC
genomic: AACCTGAAGGACCGCCTGGATCGCGAGCTGGAGCGTAACCTGGCGCTGCGgtgagacacc ... gtgtttgcagCGTGGAGCCCGGTGAGACCTCGGACTCGTTCGTGGTGTCTGGCCGCGGTAC
EST: gi|34990475|gb|CF564392.1|CF564392
EST:     AACCTGAAGGACCGCCTGGATCGCGAGCTGGAGCGTAACCTGGCGCTGCG                         CGTGGAGCCCGGTGAGACCTCGGACTCGTTCGTGGTGTCTGGCCGCGGTAC
genomic: AACCTGAAGGACCGCCTGGATCGCGAGCTGGAGCGTAACCTGGCGCTGCGgtgagacacc ... gtgtttgcagCGTGGAGCCCGGTGAGACCTCGGACTCGTTCGTGGTGTCTGGCCGCGGTAC
EST: gi|34982604|gb|CF556521.1|CF556521
EST:     AACCTGAAGGACCGCCTGGATCGCGAGCTGGAGCGTAACCTGGCGCTGCG                         CGTGGAGCCCGGTGAGACCTCGGACTCGTTCGTGGTGTCTGGCCGCGGTAC
genomic: AACCTGAAGGACCGCCTGGATCGCGAGCTGGAGCGTAACCTGGCGCTGCGgtgagacacc ... gtgtttgcagCGTGGAGCCCGGTGAGACCTCGGACTCGTTCGTGGTGTCTGGCCGCGGTAC
EST: gi|34990037|gb|CF563954.1|CF563954
EST:     AACCTGAAGGACCGCCTGGATCGCGAGCTGGAGCGTAACCTGGCGCTGCG                         CGTGGAGCCCGGTGAGACCTCGGACTCGTTCGTGGTGTCTGGCCGCGGTAC
genomic: AACCTGAAGGACCGCCTGGATCGCGAGCTGGAGCGTAACCTGGCGCTGCGgtgagacacc ... gtgtttgcagCGTGGAGCCCGGTGAGACCTCGGACTCGTTCGTGGTGTCTGGCCGCGGTAC
EST: gi|34983933|gb|CF557850.1|CF557850
EST:     AACCTGAAGGACCGCCTGGATCGCGAGCTGGAGCGTAACCTGGCGCTGCG                         CGTGGAGCCCGGTGAGACCTCGGACTCGTTCGTGGTGTCTGGCCGCGGTAC
genomic: AACCTGAAGGACCGCCTGGATCGCGAGCTGGAGCGTAACCTGGCGCTGCGgtgagacacc ... gtgtttgcagCGTGGAGCCCGGTGAGACCTCGGACTCGTTCGTGGTGTCTGGCCGCGGTAC
EST: gi|10780479|gb|AV637159.1|AV637159
EST:     AACCTGAAGGACCGCCTGGATCGCGAGCTGGAGCGTAACCTGGCGCTGCG                         CGTGGAGCCCGGTGAGACCTCGGACTCGTTCGTGGTGTCTGGCCGCGGTAC
genomic: AACCTGAAGGACCGCCTGGATCGCGAGCTGGAGCGTAACCTGGCGCTGCGgtgagacacc ... gtgtttgcagCGTGGAGCCCGGTGAGACCTCGGACTCGTTCGTGGTGTCTGGCCGCGGTAC
EST: gi|34990036|gb|CF563953.1|CF563953
EST:     AACCTGAAGGACCGCCTGGATCGCGAGCTGGAGCGTAACCTGGCGCTGCG                         CGTGGAGCCCGGTGAGACCTCGGACTCGTTCGTGGTGTCTGGCCGCGGTAC
genomic: AACCTGAAGGACCGCCTGGATCGCGAGCTGGAGCGTAACCTGGCGCTGCGgtgagacacc ... gtgtttgcagCGTGGAGCCCGGTGAGACCTCGGACTCGTTCGTGGTGTCTGGCCGCGGTAC
EST: gi|34985817|gb|CF559734.1|CF559734
EST:     AACCTGAAGGACCGCCTGGATCGCGAGCTGGAGCGTA-CCTGGCGCTGCG                         CGTGGAGCCCGGTG
genomic: AACCTGAAGGACCGCCTGGATCGCGAGCTGGAGCGTAACCTGGCGCTGCGgtgagacacc ... gtgtttgcagCGTGGAGCCCGGTG
EST: gi|34981930|gb|CF555847.1|CF555847
EST:     AACCTGAAGGACCGCCTGGATCGCGAGCTGGAGCGTAACCTGGCGCTGCG                         CGTGGAGCCCGGTGAGACCTCGGACTCGTTCGTGGTGTCTGGCCGCGGTAC
genomic: AACCTGAAGGACCGCCTGGATCGCGAGCTGGAGCGTAACCTGGCGCTGCGgtgagacacc ... gtgtttgcagCGTGGAGCCCGGTGAGACCTCGGACTCGTTCGTGGTGTCTGGCCGCGGTAC
EST: gi|34985799|gb|CF559716.1|CF559716
EST:     AACCTGAAGGACCGCCTGGATCGCGAGCTGGAGCGTAACCTGGCGCTGCG                         CGTGGAGCCCGGTGAGACCTCGGACTCGTTCGTGGTGTCTGGCCGCGGTAC
genomic: AACCTGAAGGACCGCCTGGATCGCGAGCTGGAGCGTAACCTGGCGCTGCGgtgagacacc ... gtgtttgcagCGTGGAGCCCGGTGAGACCTCGGACTCGTTCGTGGTGTCTGGCCGCGGTAC
EST: gi|34982137|gb|CF556054.1|CF556054
EST:     AACCTGAAGGACCGCCTGGATCGCGAGCTGGAGCGTAACCTGGCGCTGCG                         CGTGGAGCCCGGTGAGACCTCGGACTCGTTCGTGGTGTCTGGCCGCGGTAC
genomic: AACCTGAAGGACCGCCTGGATCGCGAGCTGGAGCGTAACCTGGCGCTGCGgtgagacacc ... gtgtttgcagCGTGGAGCCCGGTGAGACCTCGGACTCGTTCGTGGTGTCTGGCCGCGGTAC
EST: gi|49459687|gb|BP087600.1|BP087600
EST:     AACCTGAAGGACCGCCTGGATCGCGAGCTGGAGCGTAACCTGGCGCTGCG                         CGTGGAGCCCGGTGAGACCTCGGACTCGTTCGTGGTGTCTGGCCGCGGTAC
genomic: AACCTGAAGGACCGCCTGGATCGCGAGCTGGAGCGTAACCTGGCGCTGCGgtgagacacc ... gtgtttgcagCGTGGAGCCCGGTGAGACCTCGGACTCGTTCGTGGTGTCTGGCCGCGGTAC
EST: gi|34988413|gb|CF562330.1|CF562330
EST:     AACCTGAAGGACCGCCTGGATCGCGAGCTGGAGCGTAACCTGGCGCTGCG                         CGTGGAGCCCGGTGAGACCTCGGACTCGTTCGTGGTGTCTGGCCGCGGTAC
genomic: AACCTGAAGGACCGCCTGGATCGCGAGCTGGAGCGTAACCTGGCGCTGCGgtgagacacc ... gtgtttgcagCGTGGAGCCCGGTGAGACCTCGGACTCGTTCGTGGTGTCTGGCCGCGGTAC
EST: gi|14236860|gb|BG855676.1|BG855676
EST:     AACCTGAAGGACCGCCTGGATCGCGAGCTGGAGCGTAACCTGGCGCTGCG                         CGTGGAGCCCGGTGAGACCTCGGACTCGTTCGTGGTGTCTGGCCGCGGTAC
genomic: AACCTGAAGGACCGCCTGGATCGCGAGCTGGAGCGTAACCTGGCGCTGCGgtgagacacc ... gtgtttgcagCGTGGAGCCCGGTGAGACCTCGGACTCGTTCGTGGTGTCTGGCCGCGGTAC
EST: gi|34987994|gb|CF561911.1|CF561911
EST:     ATCGCGAGCTGGAGCGTAACCTGGCGCTGCG                         CGTGGAGCCCGGTGAGACCTCGGACTCGTTCGTGGTGTCTGGCCGCGGTAC
genomic: ATCGCGAGCTGGAGCGTAACCTGGCGCTGCGgtgagacacc ... gtgtttgcagCGTGGAGCCCGGTGAGACCTCGGACTCGTTCGTGGTGTCTGGCCGCGGTAC
EST: gi|161795524|gb|FC079708.1|FC079708
EST:     AACCTGAAGGACCGCCTGGATCGCGAGCTGGAGCGCAACCTGGCGCTGCG                         CGTGGAGCCCGGTGAGACCTCGGACTCGTTCGTGGTGTCTGGCCGCGGTAC
genomic: AACCTGAAGGACCGCCTGGATCGCGAGCTGGAGCGTAACCTGGCGCTGCGgtgagacacc ... gtgtttgcagCGTGGAGCCCGGTGAGACCTCGGACTCGTTCGTGGTGTCTGGCCGCGGTAC
EST: gi|34989243|gb|CF563160.1|CF563160
EST:     AACCTGAAGGACCGCCTGGATCGCGAGCTGGAGCGTAACCTGGCGCTGCG                         CGTGGAGCCCGGCGAGACCTCGGACTCGTTCGTGGTGTCTGGCCGCGGTAC
genomic: AACCTGAAGGACCGCCTGGATCGCGAGCTGGAGCGTAACCTGGCGCTGCGgtgagacacc ... gtgtttgcagCGTGGAGCCCGGTGAGACCTCGGACTCGTTCGTGGTGTCTGGCCGCGGTAC
EST: gi|34984913|gb|CF558830.1|CF558830
EST:     AACCTGAAGGACCGCCTGGATCGCGAGCTGGAGCGTAACCTGGCGCTGCG                         CGTGGAGCCCGGTGAGACCTCGGACTCGTTCGTGGTGTCTGGCCGCGGTAC
genomic: AACCTGAAGGACCGCCTGGATCGCGAGCTGGAGCGTAACCTGGCGCTGCGgtgagacacc ... gtgtttgcagCGTGGAGCCCGGTGAGACCTCGGACTCGTTCGTGGTGTCTGGCCGCGGTAC
EST: gi|34986431|gb|CF560348.1|CF560348
EST:     AACCTGAAGGACCGCCTGGATCGCGAGCTGGAGCGTAACCTGGCGCTGCG                         CGTGGAGCCCGGTGAGACCTCGGACTCGTTCGTGGTGTCTGGCCGCGGTAC
genomic: AACCTGAAGGACCGCCTGGATCGCGAGCTGGAGCGTAACCTGGCGCTGCGgtgagacacc ... gtgtttgcagCGTGGAGCCCGGTGAGACCTCGGACTCGTTCGTGGTGTCTGGCCGCGGTAC
EST: gi|34985245|gb|CF559162.1|CF559162
EST:     AACCTGAAGGACCGCCTGGATCGCGAGCTGGAGCGTAACCTGGCGCTGCG                         CGTGGAGCCCGGTGAGACCTCGGACTCGTTCGTGGTGTCTGGCCGCGGTAC
genomic: AACCTGAAGGACCGCCTGGATCGCGAGCTGGAGCGTAACCTGGCGCTGCGgtgagacacc ... gtgtttgcagCGTGGAGCCCGGTGAGACCTCGGACTCGTTCGTGGTGTCTGGCCGCGGTAC
EST: gi|34987964|gb|CF561881.1|CF561881
EST:     AACCTGAAGGACCGCCTGGATCGCGAGCTGGAGCGTAACCTGGCGCTGCG                         CGTGGAGCCCGGTGAGACCTCGGACTCGTTCGTGGTGTCTGGCCGCGGTAC
genomic: AACCTGAAGGACCGCCTGGATCGCGAGCTGGAGCGTAACCTGGCGCTGCGgtgagacacc ... gtgtttgcagCGTGGAGCCCGGTGAGACCTCGGACTCGTTCGTGGTGTCTGGCCGCGGTAC
EST: gi|34983793|gb|CF557710.1|CF557710
EST:     AACCTGAAGGACCGCCTGGATCGCGAGCTGGAGCGTAACCTGGCGCTGCG                         CGTGGAGCCCGGTGAGACCTCGGACTCGTTCGTGGTGTCTGGCCGCGGTAC
genomic: AACCTGAAGGACCGCCTGGATCGCGAGCTGGAGCGTAACCTGGCGCTGCGgtgagacacc ... gtgtttgcagCGTGGAGCCCGGTGAGACCTCGGACTCGTTCGTGGTGTCTGGCCGCGGTAC
EST: gi|22068536|gb|BQ818436.1|BQ818436
EST:     AACCTGAAGGACCGCCTGGATCGCGAGCTGGAGCGTAACCTGGCGCTGCG                         CGTGGAGCCCGGTGAGACCTCGGACTCGTTCGTGGTGTCTGGCCGCGGTAC
genomic: AACCTGAAGGACCGCCTGGATCGCGAGCTGGAGCGTAACCTGGCGCTGCGgtgagacacc ... gtgtttgcagCGTGGAGCCCGGTGAGACCTCGGACTCGTTCGTGGTGTCTGGCCGCGGTAC
EST: gi|34989676|gb|CF563593.1|CF563593
EST:     AACCTGAAGGACCGCCTGGATCGCGAGCTGGAGCGTAACCTGGCGCTGCG                         CGTGGAGCCCGGTGAGACCTCGGACTCGTTCGTGGTGTCTGGCCGCGGTAC
genomic: AACCTGAAGGACCGCCTGGATCGCGAGCTGGAGCGTAACCTGGCGCTGCGgtgagacacc ... gtgtttgcagCGTGGAGCCCGGTGAGACCTCGGACTCGTTCGTGGTGTCTGGCCGCGGTAC
EST: gi|34985816|gb|CF559733.1|CF559733
EST:     AACCTGAAGGACCGCCTGGATCGCGAGCTGGAGCGTAACCTGGCGCTGCG                         CGTGGAGCCCGGTGAGACCTCGGACTCGTTCGTGGTGTCTGGCCGCGGTAC
genomic: AACCTGAAGGACCGCCTGGATCGCGAGCTGGAGCGTAACCTGGCGCTGCGgtgagacacc ... gtgtttgcagCGTGGAGCCCGGTGAGACCTCGGACTCGTTCGTGGTGTCTGGCCGCGGTAC
EST: gi|34981931|gb|CF555848.1|CF555848
EST:     AACCTGAAGGACCGCCTGGATCGCGAGCTGGAGCGTAACCTGGCGCTGCG                         CGTGGAGCCCGGTGAGACCTCGGACTCGTTCGTGGTGTCTGGCCGCGGTAC
genomic: AACCTGAAGGACCGCCTGGATCGCGAGCTGGAGCGTAACCTGGCGCTGCGgtgagacacc ... gtgtttgcagCGTGGAGCCCGGTGAGACCTCGGACTCGTTCGTGGTGTCTGGCCGCGGTAC
EST: gi|10788583|gb|AV626303.1|AV626303
EST:     AACCTGAAGGACCGCCTGGATCGCGAGCTGGAGCGTAACCTGGCGCTGCG                         CGTGGAGCCCGGTGAGACCTCGGACTCGTTCGTGGTGTCTGGCCGCGGTAC
genomic: AACCTGAAGGACCGCCTGGATCGCGAGCTGGAGCGTAACCTGGCGCTGCGgtgagacacc ... gtgtttgcagCGTGGAGCCCGGTGAGACCTCGGACTCGTTCGTGGTGTCTGGCCGCGGTAC
EST: gi|161792685|gb|FC080665.1|FC080665
EST:     CCGCCTGGATCGCGAGCTGGAGCGCAACCTGGCGCTGCG                         CGTGGAGCCCGGTGAGACCTCGGACTCGTTCGTGGTGTCTGGCCGCGGTAC
genomic: CCGCCTGGATCGCGAGCTGGAGCGTAACCTGGCGCTGCGgtgagacacc ... gtgtttgcagCGTGGAGCCCGGTGAGACCTCGGACTCGTTCGTGGTGTCTGGCCGCGGTAC
EST: gi|34988708|gb|CF562625.1|CF562625
EST:     AACCTGAAGGACCGCCTGGATCGCGAGCTGGAGCGTAACCTGGCGCTGCG                         CGTGGAGCCCGGTGAGACCTCGGACTCGTTCGTGGTGTCTGGCCGCGGTAC
genomic: AACCTGAAGGACCGCCTGGATCGCGAGCTGGAGCGTAACCTGGCGCTGCGgtgagacacc ... gtgtttgcagCGTGGAGCCCGGTGAGACCTCGGACTCGTTCGTGGTGTCTGGCCGCGGTAC
EST: gi|34990476|gb|CF564393.1|CF564393
EST:     AACCTGAAGGACCGCCTGGATCGCGAGCTGGAGCGTAACCTGGCGCTGCG                         CGTGGAGCCCGGTGAGACCTCGGACTCGTTCGTGGTGTCTGGCCGCGGTAC
genomic: AACCTGAAGGACCGCCTGGATCGCGAGCTGGAGCGTAACCTGGCGCTGCGgtgagacacc ... gtgtttgcagCGTGGAGCCCGGTGAGACCTCGGACTCGTTCGTGGTGTCTGGCCGCGGTAC
EST: gi|34981120|gb|CF555037.1|CF555037
EST:     AACCTGAAGGACCGCCTGGATCGCGAGCTGGAGCGTAACCTGGCGCTGCG                         CGTGGAGCCCGGTGAGACCTCGGACTCGTTCGTGGTGTCTGGCCGCGGTAC
genomic: AACCTGAAGGACCGCCTGGATCGCGAGCTGGAGCGTAACCTGGCGCTGCGgtgagacacc ... gtgtttgcagCGTGGAGCCCGGTGAGACCTCGGACTCGTTCGTGGTGTCTGGCCGCGGTAC
EST: gi|34994093|gb|CF568010.1|CF568010
EST:     AACCTGAAGGACCGCCTGGATCGCGAGCTGGAGCGTAACCTGGCGCTGCG                         CGTGGAGCCCGGTGAGACCTCGGACTCGTTCGTGGTGTCTGGCCGCGGTAC
genomic: AACCTGAAGGACCGCCTGGATCGCGAGCTGGAGCGTAACCTGGCGCTGCGgtgagacacc ... gtgtttgcagCGTGGAGCCCGGTGAGACCTCGGACTCGTTCGTGGTGTCTGGCCGCGGTAC
EST: gi|10779184|gb|AV635864.1|AV635864
EST:     AACCTGAAGGACCGCCTGGATCGCGAGCTGGAGCGTAACCTGGCGCTGCG                         CGTGGAGCCCGGTGAGACCTCGGACTCGTTCGTGGTGTCTGGCCGCGGTAC
genomic: AACCTGAAGGACCGCCTGGATCGCGAGCTGGAGCGTAACCTGGCGCTGCGgtgagacacc ... gtgtttgcagCGTGGAGCCCGGTGAGACCTCGGACTCGTTCGTGGTGTCTGGCCGCGGTAC
EST: gi|34981119|gb|CF555036.1|CF555036
EST:     AACCTGAAGGACCGCCTGGATCGCGAGCTGGAGCGTAACCTGGCGCTGCG                         CGTGGAGCCCGGTGAGACCTCGGACTCGTTCGTGGTGTCTGGCCGCGGTAC
genomic: AACCTGAAGGACCGCCTGGATCGCGAGCTGGAGCGTAACCTGGCGCTGCGgtgagacacc ... gtgtttgcagCGTGGAGCCCGGTGAGACCTCGGACTCGTTCGTGGTGTCTGGCCGCGGTAC
EST: gi|6547128|gb|AV392912.1|AV392912
EST:     AACCTGAAGGACCGCCTGGATCGCGAGCTGGAGCGTAACCTGGCGCTGCG                         CGTGGAGCCCGGTGAGACCTCGGACTCGTTCGTGGTGTCTGGCCGCGGTAC
genomic: AACCTGAAGGACCGCCTGGATCGCGAGCTGGAGCGTAACCTGGCGCTGCGgtgagacacc ... gtgtttgcagCGTGGAGCCCGGTGAGACCTCGGACTCGTTCGTGGTGTCTGGCCGCGGTAC
EST: gi|10779535|gb|AV636215.1|AV636215
EST:     AACCTGAAGGACCGCCTGGATCGCGAGCTGGAGCGTAACCTGGCGCTGCG                         CGTGGAGCCCGGTGAGACCTCGGACTCGTTCGTGGTGTCTGGCCGCGGTAC
genomic: AACCTGAAGGACCGCCTGGATCGCGAGCTGGAGCGTAACCTGGCGCTGCGgtgagacacc ... gtgtttgcagCGTGGAGCCCGGTGAGACCTCGGACTCGTTCGTGGTGTCTGGCCGCGGTAC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

agcttctttgtgaacatcacattgaccccctattgcctggctcttgtgtttgcagCGTGGAGCCCGGTGAGACCTCGGACTCGTTCGTGGTGTCTGGCCGCGGTACTCTGCACCTGGGTATCCTCATTGAGAACATGCGTCGTGAGGGCTACGAG
                   cattgac  putative branch site (score: 3)
                                        ctcttgt  putative PPT
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
tgactaaggtggcttggttgaacaacaaggagctggaccgcgtctagcttctttgtgaacatcacattgaccccctattgcctggctcttgtgtttgcagCGTGGAGCCCGGTGAGACCTCGGACTCGTTCGTGGTGTCTGGCCGCGGTACTCTGCACCTGGGTATCCTCATTGAGAACATGCGTCGTGAGGGCTACGAG

- - - - - - -ttggttg
- - - - - - - - - - aacaaca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -acattga