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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgagaccgggctgctgctgctgcctacccgtggcgctgctgctggcatccggggaacggtacacacatgcgtgaggttgtagcttcgctgctttggatatcatgctgacgtcgctatgccggcccctgtccacctccgcccctgtgcagATCCGCCCGCCCTCCGTGCAGCCGGCGGCGCCCCTGCAGCTGCTGTGCGCCAACATCGACTACGATGAGCACAAGGGCCGCATCGCCATCGGCCGCGTCA

Basic information

species Chlamydomonas reinhardtii
transcript EDO98397
intron # 8
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|34987981|gb|CF561898.1|CF561898
EST:     AGACGCTGGCTGAGGACCTGGAGCCCCTGTTTGCGACCATTGTCAAGGAG                         ATCCGCCCGCCCTCCGTGCAGCCGGCGGCGCCCCTGCAGCTGCTGTGCGCC
genomic: AGACGCTGGCTGAGGACCTGGAGCCCCTGTTTGCGACCATTGTCAAGGAGgtgagaccgg ... ccctgtgcagATCCGCCCGCCCTCCGTGCAGCCGGCGGCGCCCCTGCAGCTGCTGTGCGCC
EST: gi|10784235|gb|AV640907.1|AV640907
EST:     AGACGCTGGCTGAGGACCTGGAGCCCCTGTTTGCGACCATTGTCAAGGAG                         ATCCGCCCGCCCTCCGTGCAGCCGGCGGCGCCCCTGCAGCTGCTGTGCGCC
genomic: AGACGCTGGCTGAGGACCTGGAGCCCCTGTTTGCGACCATTGTCAAGGAGgtgagaccgg ... ccctgtgcagATCCGCCCGCCCTCCGTGCAGCCGGCGGCGCCCCTGCAGCTGCTGTGCGCC
EST: gi|34988709|gb|CF562626.1|CF562626
EST:     AGACGCTGGCTGAGGACCTGGAGCCCCTGTTTGCGACCATTGTCAAGGAG                         ATCCGCCCGCCCTCCGTGCAGCCGGCGGCGCCCCTGCAGCTGCTGTGCGCC
genomic: AGACGCTGGCTGAGGACCTGGAGCCCCTGTTTGCGACCATTGTCAAGGAGgtgagaccgg ... ccctgtgcagATCCGCCCGCCCTCCGTGCAGCCGGCGGCGCCCCTGCAGCTGCTGTGCGCC
EST: gi|34985800|gb|CF559717.1|CF559717
EST:     AGACGCTGGCTGAGGACCTGGAGCCCCTGTTTGCGACCATTGTCAAGGAG                         ATCCGCCCGCCCTCCGTGCAGCCGGCGGCGCCCCTGCAGCTGCTGTGCGCC
genomic: AGACGCTGGCTGAGGACCTGGAGCCCCTGTTTGCGACCATTGTCAAGGAGgtgagaccgg ... ccctgtgcagATCCGCCCGCCCTCCGTGCAGCCGGCGGCGCCCCTGCAGCTGCTGTGCGCC
EST: gi|34987972|gb|CF561889.1|CF561889
EST:     AGACGCTGGCTGAGGACCTGGAGCCCCTGTTTGCGACCATTGTCAAGGAG                         ATCCGCCCGCCCTCCGTGCAGCCGGCGGCGCCCCTGCAGCTGCTGTGCGCC
genomic: AGACGCTGGCTGAGGACCTGGAGCCCCTGTTTGCGACCATTGTCAAGGAGgtgagaccgg ... ccctgtgcagATCCGCCCGCCCTCCGTGCAGCCGGCGGCGCCCCTGCAGCTGCTGTGCGCC
EST: gi|34983512|gb|CF557429.1|CF557429
EST:     AGACGCTGGCTGAGGACCTGGAGCCCCTGTTTGCGACCATTGTCAAGGAG                         ATCCGCCCGCCCTCCGTGCAGTCGGCGGCGCCCCTGCAGCTGCTGTGCGCC
genomic: AGACGCTGGCTGAGGACCTGGAGCCCCTGTTTGCGACCATTGTCAAGGAGgtgagaccgg ... ccctgtgcagATCCGCCCGCCCTCCGTGCAGCCGGCGGCGCCCCTGCAGCTGCTGTGCGCC
EST: gi|161813272|gb|FC101441.1|FC101441
EST:     AGACGCTGGCTGAGGACCTGGAGCCCCTGTTCGCGACCATTGTCAAGGAG                         ATCCGCCCGCCCTCCGTGCAGCCGGCGGCGCCCCTGCAGCTGCTGTGCGCC
genomic: AGACGCTGGCTGAGGACCTGGAGCCCCTGTTTGCGACCATTGTCAAGGAGgtgagaccgg ... ccctgtgcagATCCGCCCGCCCTCCGTGCAGCCGGCGGCGCCCCTGCAGCTGCTGTGCGCC
EST: gi|49458891|gb|BP086804.1|BP086804
EST:     AGACGCTGGCTGAGGACCTGGAGCCCCTGTTTGCGACCATTGTCAAGGAG                         ATCCGCCCGCCCTCCGTGCAGCCGGCGGCGCCCCTGCAGCTGCTGTGCGCC
genomic: AGACGCTGGCTGAGGACCTGGAGCCCCTGTTTGCGACCATTGTCAAGGAGgtgagaccgg ... ccctgtgcagATCCGCCCGCCCTCCGTGCAGCCGGCGGCGCCCCTGCAGCTGCTGTGCGCC
EST: gi|22075814|gb|BQ824590.1|BQ824590
EST:     AGACGCTGGCTGAGGACCTGGAGCCCCTGTTTGCGACCATTGTCAAGGAG                         ATCCGCCCGCCCTCCGTGCAGCCGGCGGCGCCCCTGCAGCTGCTGTGCGCC
genomic: AGACGCTGGCTGAGGACCTGGAGCCCCTGTTTGCGACCATTGTCAAGGAGgtgagaccgg ... ccctgtgcagATCCGCCCGCCCTCCGTGCAGCCGGCGGCGCCCCTGCAGCTGCTGTGCGCC
EST: gi|7686797|gb|AW757445.1|AW757445
EST:     ATTGTCAAGGAG                         ATCCGCCCGCCCTCCGTGCAGCCGGCGGCGCCCCTGCAGCTGCTGTGCGCC
genomic: ATTGTCAAGGAGgtgagaccgg ... ccctgtgcagATCCGCCCGCCCTCCGTGCAGCCGGCGGCGCCCCTGCAGCTGCTGTGCGCC
EST: gi|10125782|gb|BE724486.1|BE724486
EST:     AGACGCTGGCTGAGGACCTGGAGCCCCTGTTTGCGACCATTGTCAAGGAG                         ATCCGCCCGCCCTCCGTGCAGCCGGCGGCGCCCCTGCAGCTGCTGTGCGCC
genomic: AGACGCTGGCTGAGGACCTGGAGCCCCTGTTTGCGACCATTGTCAAGGAGgtgagaccgg ... ccctgtgcagATCCGCCCGCCCTCCGTGCAGCCGGCGGCGCCCCTGCAGCTGCTGTGCGCC
EST: gi|10785257|gb|AV641929.1|AV641929
EST:     AGACGCTGGCTGAGGACCTGGAGCCCCTGTTTGCGACCATTGTCAAGGAG                         ATCCGCCCGCCCTCCGTGCAGCCGGCGGCGCCCCTGCAGCTGCTGTGCGCC
genomic: AGACGCTGGCTGAGGACCTGGAGCCCCTGTTTGCGACCATTGTCAAGGAGgtgagaccgg ... ccctgtgcagATCCGCCCGCCCTCCGTGCAGCCGGCGGCGCCCCTGCAGCTGCTGTGCGCC
EST: gi|34983933|gb|CF557850.1|CF557850
EST:     AGACGCTGGCTGAGGACCTGGAGCCCCTGTTTGCGACCATTGTCAAGGAG                         ATCCGCCCGCCCTCCGTGCAGCCGGCGGCGCCCCTGCAGCTGCTGTGCGCC
genomic: AGACGCTGGCTGAGGACCTGGAGCCCCTGTTTGCGACCATTGTCAAGGAGgtgagaccgg ... ccctgtgcagATCCGCCCGCCCTCCGTGCAGCCGGCGGCGCCCCTGCAGCTGCTGTGCGCC
EST: gi|34985817|gb|CF559734.1|CF559734
EST:     AGACGCTGGCTGAGGACCTGGAGCCCCTGTTTGCGACCATTGTCAAGGAG                         ATCCGCCCGCCCTCCGTGCAGCCGGCGGCGCCCCTGCAGCTGCTGTGCGCC
genomic: AGACGCTGGCTGAGGACCTGGAGCCCCTGTTTGCGACCATTGTCAAGGAGgtgagaccgg ... ccctgtgcagATCCGCCCGCCCTCCGTGCAGCCGGCGGCGCCCCTGCAGCTGCTGTGCGCC
EST: gi|34984373|gb|CF558290.1|CF558290
EST:     AGACGCTGGCTGAGGACCTGGAGCCCCTGTTTGCGACCATTGTCAAGGAG                         ATCTGTCCGCCCTCCGTGCAGCCGGCGGCGCCCCTGCAGCTGCTGTGCGCC
genomic: AGACGCTGGCTGAGGACCTGGAGCCCCTGTTTGCGACCATTGTCAAGGAGgtgagaccgg ... ccctgtgcagATCCGCCCGCCCTCCGTGCAGCCGGCGGCGCCCCTGCAGCTGCTGTGCGCC
EST: gi|34984914|gb|CF558831.1|CF558831
EST:     TGCGACCATTGTCAAGNAG                         ATCCGCCCGCCCTCCGTGCAGCCGGCGGCGCCCCTGCAGCTGCTGTGCGCC
genomic: TGCGACCATTGTCAAGGAGgtgagaccgg ... ccctgtgcagATCCGCCCGCCCTCCGTGCAGCCGGCGGCGCCCCTGCAGCTGCTGTGCGCC
EST: gi|34986186|gb|CF560103.1|CF560103
EST:     AGACGCTGGCTGAGGACCTGGAGCCCCTGTTTGCGACCATTGTCAAGGAG                         ATCCGCCCGCCCTCCGTGCAGCCGGCGGCGCCCCTGCAGCTGCTGTGCGCC
genomic: AGACGCTGGCTGAGGACCTGGAGCCCCTGTTTGCGACCATTGTCAAGGAGgtgagaccgg ... ccctgtgcagATCCGCCCGCCCTCCGTGCAGCCGGCGGCGCCCCTGCAGCTGCTGTGCGCC
EST: gi|22068537|gb|BQ818437.1|BQ818437
EST:     AGACGCTGGCTGAGGACCTGGAGCCCCTGTTTGCGACCATTGTCAAGGAG                         ATCCGCCCGCCCTCCGTGCAGCCGGCGGCGCCCCTGCAGCTGCTGTGCGCC
genomic: AGACGCTGGCTGAGGACCTGGAGCCCCTGTTTGCGACCATTGTCAAGGAGgtgagaccgg ... ccctgtgcagATCCGCCCGCCCTCCGTGCAGCCGGCGGCGCCCCTGCAGCTGCTGTGCGCC
EST: gi|34988414|gb|CF562331.1|CF562331
EST:     AGACGCTGGCTGAGGACCTGGAGCCCCTGTTTGCGACCATTGTCAAGGAG                         ATCCGCCCGCCCTCCGTGCAGCCGGCGGCGCCCCTGCAGCTGCTGTGCGCC
genomic: AGACGCTGGCTGAGGACCTGGAGCCCCTGTTTGCGACCATTGTCAAGGAGgtgagaccgg ... ccctgtgcagATCCGCCCGCCCTCCGTGCAGCCGGCGGCGCCCCTGCAGCTGCTGTGCGCC
EST: gi|34981931|gb|CF555848.1|CF555848
EST:     AGACGCTGGCTGAGGACCTGGAGCCCCTGTTTGCGACCATTGTCAAGGAG                         ATCCGCCCGCCCTCCGTGCAGCCGGCGGCGCCCCTGCAGCTGCTGTGCGCC
genomic: AGACGCTGGCTGAGGACCTGGAGCCCCTGTTTGCGACCATTGTCAAGGAGgtgagaccgg ... ccctgtgcagATCCGCCCGCCCTCCGTGCAGCCGGCGGCGCCCCTGCAGCTGCTGTGCGCC
EST: gi|34984915|gb|CF558832.1|CF558832
EST:     AGACGCTGGCTGAGGACCTGGAGCCCCTGTTTGCGACCATTGTCAAGGAG                         ATCCGCCCGCCCTCCGTGCAGCCGGCGGCGCCCCTGCAGCTGCTGTGCGCC
genomic: AGACGCTGGCTGAGGACCTGGAGCCCCTGTTTGCGACCATTGTCAAGGAGgtgagaccgg ... ccctgtgcagATCCGCCCGCCCTCCGTGCAGCCGGCGGCGCCCCTGCAGCTGCTGTGCGCC
EST: gi|10776843|gb|AV633523.1|AV633523
EST:     AGACGCTGGCTGAGGACCTGGAGCCCCTGTTTGCGACCATTGTCAAGGAG                         ATCCGCCCGCCCTCCGTGCAGCCGGCGGCGCCCCTGCAGCTGCTGTGCGCC
genomic: AGACGCTGGCTGAGGACCTGGAGCCCCTGTTTGCGACCATTGTCAAGGAGgtgagaccgg ... ccctgtgcagATCCGCCCGCCCTCCGTGCAGCCGGCGGCGCCCCTGCAGCTGCTGTGCGCC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ggatatcatgctgacgtcgctatgccggcccctgtccacctccgcccctgtgcagATCCGCCCGCCCTCCGTGCAGCCGGCGGCGCCCCTGCAGCTGCTGTGCGCCAACATCGACTACGATGAGCACAAGGGCCGCATCGCCATCGGCCGCGTCA
        tgctgac  putative branch site (score: 2)
                            cccctgtccacctccg  putative PPT