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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgcgttggaagccagcaccggaagggcacttatcaggccacattgcaaccttcgatctgggcggaatcgcaaagatgttgtttgccctaaccgcatgccttgcgttccccaatccattttggcccgcagGTGCGCCAGGCCAAGATCGCTGAGCTGTTCGTGTACGACAACTTCAGCCGCGTGCCGGTCGATGAGGTGGCGGCTGGTGACATCTGTGCGCTGTCGGGCA

Basic information

species Chlamydomonas reinhardtii
transcript EDO98397
intron # 9
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|34987981|gb|CF561898.1|CF561898
EST:     TCAAGCGTGGCCAGACCATCTCGATCTGCTCCTCGCTGGAGCCCGGCAAG                         GTGCGCCAGGCCAAGATCGCTGAGCTGTTCGTGTACGACAACTTCAGCCGC
genomic: TCAAGCGTGGCCAGACCATCTCGATCTGCTCCTCGCTGGAGCCCGGCAAGgtgcgttgga ... tggcccgcagGTGCGCCAGGCCAAGATCGCTGAGCTGTTCGTGTACGACAACTTCAGCCGC
EST: gi|10784235|gb|AV640907.1|AV640907
EST:     TCAAGCGTGGCCAGACCATCTCGATCTGCTCCTCGCTGGAGCCCGGCAAG                         GTGCGCCAGGCCAAGATCGCTGAGCTGTTCGTGTACGACAACTTCAGCCGC
genomic: TCAAGCGTGGCCAGACCATCTCGATCTGCTCCTCGCTGGAGCCCGGCAAGgtgcgttgga ... tggcccgcagGTGCGCCAGGCCAAGATCGCTGAGCTGTTCGTGTACGACAACTTCAGCCGC
EST: gi|49462475|gb|BP090388.1|BP090388
EST:     TCAAGCGTGGCCAGACCATCTCGATCTGCTCCTCGCTGGAGCCCGGCAAG                         GTGCGCCAGGCCAAGATCGCTGAGCTGTTCGTGTACGACAACTTCAGCCGC
genomic: TCAAGCGTGGCCAGACCATCTCGATCTGCTCCTCGCTGGAGCCCGGCAAGgtgcgttgga ... tggcccgcagGTGCGCCAGGCCAAGATCGCTGAGCTGTTCGTGTACGACAACTTCAGCCGC
EST: gi|34988709|gb|CF562626.1|CF562626
EST:     TCAAGCGTGGCCAGACCATCTCGATCTGCTCCTCGCTGGAGCCCGGCAAG                         GTGCGCCAGGCCAAGATCGCTGAGCTGTTCGTGTACGACAACTTCAGCCGC
genomic: TCAAGCGTGGCCAGACCATCTCGATCTGCTCCTCGCTGGAGCCCGGCAAGgtgcgttgga ... tggcccgcagGTGCGCCAGGCCAAGATCGCTGAGCTGTTCGTGTACGACAACTTCAGCCGC
EST: gi|34985800|gb|CF559717.1|CF559717
EST:     TCAAGCGTGGCCAGACCATCTCGATCTGCTCCTCGCTGGAGCCCGGCAAG                         GTGCGCCAGGCCAAGATCGCTGAGCTGTTCGTGTACGACAACTTCAGCCGC
genomic: TCAAGCGTGGCCAGACCATCTCGATCTGCTCCTCGCTGGAGCCCGGCAAGgtgcgttgga ... tggcccgcagGTGCGCCAGGCCAAGATCGCTGAGCTGTTCGTGTACGACAACTTCAGCCGC
EST: gi|34990038|gb|CF563955.1|CF563955
EST:     TCAAGCGTGGCCAGACCATCTCGATCTGCTCCTCGCTGGAGCCCGGCAAG                         GTGCGCCAGGCCAAGATCGCTGAGCTGTTCGTGTACGACAACTTCAGCCGC
genomic: TCAAGCGTGGCCAGACCATCTCGATCTGCTCCTCGCTGGAGCCCGGCAAGgtgcgttgga ... tggcccgcagGTGCGCCAGGCCAAGATCGCTGAGCTGTTCGTGTACGACAACTTCAGCCGC
EST: gi|34987972|gb|CF561889.1|CF561889
EST:     TCAAGCGTGGCCAGACCATCTCGATCTGCTCCTCGCTGGAGCCCGGCAAG                         GTGCGCCAGGCCAAGATCGCTGAGCTGTTCGTGTACGACAACTTCTA-CCG
genomic: TCAAGCGTGGCCAGACCATCTCGATCTGCTCCTCGCTGGAGCCCGGCAAGgtgcgttgga ... tggcccgcagGTGCGCCAGGCCAAGATCGCTGAGCTGTTCGTGTACGACAACTTC-AGCCG
EST: gi|34983512|gb|CF557429.1|CF557429
EST:     TCAAGCGTGGCCAGACCATCTCGATCTGCTCCTCGCTGGAGCCCGGCAAG                         GTGCGCCAGGCCAAGATCGCTGAGCTGTTCGTGTACGACAACTTCAGTCGC
genomic: TCAAGCGTGGCCAGACCATCTCGATCTGCTCCTCGCTGGAGCCCGGCAAGgtgcgttgga ... tggcccgcagGTGCGCCAGGCCAAGATCGCTGAGCTGTTCGTGTACGACAACTTCAGCCGC
EST: gi|14239935|gb|BG858751.1|BG858751
EST:     TCAAGCGTGGCCAGACCATCTCGATCTGCTCCTCGCTGGAGCCCGGCAAG                         GTGCGCCAGGCCAAGATCGCTGAGCTGTTCGTGTACGACAACTTCAGCCGC
genomic: TCAAGCGTGGCCAGACCATCTCGATCTGCTCCTCGCTGGAGCCCGGCAAGgtgcgttgga ... tggcccgcagGTGCGCCAGGCCAAGATCGCTGAGCTGTTCGTGTACGACAACTTCAGCCGC
EST: gi|34983932|gb|CF557849.1|CF557849
EST:     CAAGCGTGGCCAGACCATCTCGATCTGCTCCTCGCT-GATGCCCGGCAAG                         GTGCGCCAGGCCAAGATCGCTGAGCTGTTCGTGTACGACAACTTCAGCCGC
genomic: CAAGCGTGGCCAGACCATCTCGATCTGCTCCTCGCTGGA-GCCCGGCAAGgtgcgttgga ... tggcccgcagGTGCGCCAGGCCAAGATCGCTGAGCTGTTCGTGTACGACAACTTCAGCCGC
EST: gi|10775954|gb|AV632634.1|AV632634
EST:     CAAGCGTGGCCAGACCATCTCGATCTGCTCCTCGCTGGAGCCCGGCAAG                         GTGCGCCAGGCCAAGATCGCTGAGCTGTTCGTGTACGACAACTTCAGCCGC
genomic: CAAGCGTGGCCAGACCATCTCGATCTGCTCCTCGCTGGAGCCCGGCAAGgtgcgttgga ... tggcccgcagGTGCGCCAGGCCAAGATCGCTGAGCTGTTCGTGTACGACAACTTCAGCCGC
EST: gi|34986185|gb|CF560102.1|CF560102
EST:     TCAAGCGTGGCCAGACCATCTCGATCTGCTCCTCGCTGGAGCCCGGCAAG                         GTGCGCCAGGCCAAGATCGCTGAGCTGTTCGTGTACGACAACTTCAGCCGC
genomic: TCAAGCGTGGCCAGACCATCTCGATCTGCTCCTCGCTGGAGCCCGGCAAGgtgcgttgga ... tggcccgcagGTGCGCCAGGCCAAGATCGCTGAGCTGTTCGTGTACGACAACTTCAGCCGC
EST: gi|49458891|gb|BP086804.1|BP086804
EST:     TCAAGCGTGGCCAGACCATCTCGATCTGCTCCTCGCTGGAGCCCGGCAAG                         GTGCGCCAGGCCAAGATCGCTGAGCTGTTCGTGTACGACAACTTCAGCCGC
genomic: TCAAGCGTGGCCAGACCATCTCGATCTGCTCCTCGCTGGAGCCCGGCAAGgtgcgttgga ... tggcccgcagGTGCGCCAGGCCAAGATCGCTGAGCTGTTCGTGTACGACAACTTCAGCCGC
EST: gi|10779636|gb|AV636316.1|AV636316
EST:     TCAAGCGTGGCCAGACCATCTCGATCTGCTCCTCGCTGGAGCCCGGCAAG                         GTGCGCCAGGCCAAGATCGCTGAGCTGTTCGTGTACGACAACTTCAGCCGC
genomic: TCAAGCGTGGCCAGACCATCTCGATCTGCTCCTCGCTGGAGCCCGGCAAGgtgcgttgga ... tggcccgcagGTGCGCCAGGCCAAGATCGCTGAGCTGTTCGTGTACGACAACTTCAGCCGC
EST: gi|34991853|gb|CF565770.1|CF565770
EST:     TCAAGCGTGGCCAGACCATCTCGATCTGCTCCTCGCTGGAGCCCGGCAAG                         GTGCGCCAGGCCAAGATCGCTGAGCTGTTCGTGTACGACAACTTCAGCCGC
genomic: TCAAGCGTGGCCAGACCATCTCGATCTGCTCCTCGCTGGAGCCCGGCAAGgtgcgttgga ... tggcccgcagGTGCGCCAGGCCAAGATCGCTGAGCTGTTCGTGTACGACAACTTCAGCCGC
EST: gi|22075814|gb|BQ824590.1|BQ824590
EST:     TCAAGCGTGGCCAGACCATCTCGATCTGCTCCTCGCTGGAGCCCGGCAAG                         GTGCGCCAGGCCAAGATCGCTGAGCTGTTCGTGTACGACAACTTCAGCCGC
genomic: TCAAGCGTGGCCAGACCATCTCGATCTGCTCCTCGCTGGAGCCCGGCAAGgtgcgttgga ... tggcccgcagGTGCGCCAGGCCAAGATCGCTGAGCTGTTCGTGTACGACAACTTCAGCCGC
EST: gi|7686797|gb|AW757445.1|AW757445
EST:     TCAAGCGTGGCCAGACCATCTCGATCTGCTCCTCGCTGGAGCCCGGCAAG                         GTGCGCCAGGCCAAGATCGCTGAGCTGTTCGTGTACGACAACTTCAGCCGC
genomic: TCAAGCGTGGCCAGACCATCTCGATCTGCTCCTCGCTGGAGCCCGGCAAGgtgcgttgga ... tggcccgcagGTGCGCCAGGCCAAGATCGCTGAGCTGTTCGTGTACGACAACTTCAGCCGC
EST: gi|10125782|gb|BE724486.1|BE724486
EST:     TCAAGCGTGGCCAGACCATCTCGATCTGCTCCTCGCTGGAGCCCGGCAAG                         GTGCGCCAGGCCAAGATCGCTGAGCTGTTCGTGTACGACAACTTCAGCCGC
genomic: TCAAGCGTGGCCAGACCATCTCGATCTGCTCCTCGCTGGAGCCCGGCAAGgtgcgttgga ... tggcccgcagGTGCGCCAGGCCAAGATCGCTGAGCTGTTCGTGTACGACAACTTCAGCCGC
EST: gi|10785257|gb|AV641929.1|AV641929
EST:     TCAAGCGTGGCCAGACCATCTCGATCTGCTCCTCGCTGGAGCCCGGCAAG                         GTGCGCCAGGCCAAGATCGCTGAGCTGTTCGTGTACGACAACTTCAGC
genomic: TCAAGCGTGGCCAGACCATCTCGATCTGCTCCTCGCTGGAGCCCGGCAAGgtgcgttgga ... tggcccgcagGTGCGCCAGGCCAAGATCGCTGAGCTGTTCGTGTACGACAACTTCAGC
EST: gi|34990037|gb|CF563954.1|CF563954
EST:     TCAAGCGTGGCCAGACCATCTCGATCTGCTCCTCGCTGGAGCCCGGCAAG                         GTGCGCCAGGCCAAGATCGCTGAGCTGTTCGTGTACGACAACTTCAGCCGC
genomic: TCAAGCGTGGCCAGACCATCTCGATCTGCTCCTCGCTGGAGCCCGGCAAGgtgcgttgga ... tggcccgcagGTGCGCCAGGCCAAGATCGCTGAGCTGTTCGTGTACGACAACTTCAGCCGC
EST: gi|34983933|gb|CF557850.1|CF557850
EST:     TCAAGCGTGGCCAGACCATCTCGATCTGCTCCTCGCTGGAGCCCGGCAAG                         GTGCGCCAGGCCAAGATCGCTGAGCTGTTCGTGTACGACAACTTCAGCCGC
genomic: TCAAGCGTGGCCAGACCATCTCGATCTGCTCCTCGCTGGAGCCCGGCAAGgtgcgttgga ... tggcccgcagGTGCGCCAGGCCAAGATCGCTGAGCTGTTCGTGTACGACAACTTCAGCCGC
EST: gi|34990036|gb|CF563953.1|CF563953
EST:     TCAAGCGTGGCCAGACCATCTCGATCTGCTCCTCGCTGGAGCCCGGCAAG                         GGGCGCCAGGCCAAGATCGCTGAGCTGTTCGTGTAGGACAAC-TCAAGCCG
genomic: TCAAGCGTGGCCAGACCATCTCGATCTGCTCCTCGCTGGAGCCCGGCAAGgtgcgttgga ... tggcccgcagGTGCGCCAGGCCAAGATCGCTGAGCTGTTCGTGTACGACAACTTC-AGCCG
EST: gi|34985817|gb|CF559734.1|CF559734
EST:     TCAAGCGTGGCCAGACCATCTCGATCTGCTCCTCGCTGGAGCCCGGCAAG                         GTGCGCCAGGCCAAGATCGCTGAGCTGTTCGTGTACGACAACTTCAGCCGC
genomic: TCAAGCGTGGCCAGACCATCTCGATCTGCTCCTCGCTGGAGCCCGGCAAGgtgcgttgga ... tggcccgcagGTGCGCCAGGCCAAGATCGCTGAGCTGTTCGTGTACGACAACTTCAGCCGC
EST: gi|34981930|gb|CF555847.1|CF555847
EST:     TGGAGCCCGGCAAG                         GTGCGCCAGGCCAAGATCGCTGAGCTGTTCGTGTACGACAACTTCAGCCGC
genomic: TGGAGCCCGGCAAGgtgcgttgga ... tggcccgcagGTGCGCCAGGCCAAGATCGCTGAGCTGTTCGTGTACGACAACTTCAGCCGC
EST: gi|34985799|gb|CF559716.1|CF559716
EST:     TCAAGCGTGGCCAGACCATCTCGATCTGCTCCTCGCTGGAGCCCGGCAAG                         GTGCGCCAGGCCAAGATCGCTGAGCTGTTCGTGTACGACAACTTCAGCCGC
genomic: TCAAGCGTGGCCAGACCATCTCGATCTGCTCCTCGCTGGAGCCCGGCAAGgtgcgttgga ... tggcccgcagGTGCGCCAGGCCAAGATCGCTGAGCTGTTCGTGTACGACAACTTCAGCCGC
EST: gi|34984373|gb|CF558290.1|CF558290
EST:     TCAAGCGTGGCCAGACCATCTCGATCTGCTCCTCGCTGGAGCCCGGCAAG                         GTGCGCCAGGCCAAGATCGCTGAGCTGTTCGTGTACGACAACTTCAGCCGC
genomic: TCAAGCGTGGCCAGACCATCTCGATCTGCTCCTCGCTGGAGCCCGGCAAGgtgcgttgga ... tggcccgcagGTGCGCCAGGCCAAGATCGCTGAGCTGTTCGTGTACGACAACTTCAGCCGC
EST: gi|34988413|gb|CF562330.1|CF562330
EST:     TCAAGCGTGGCCAGACCATCTCGATCTGCTCCTCGCTGGAGCCCGGCAAG                         GTGCGCCAGGCCAAGATCGCTGAGCTGTTCGTGTACGACAACTTCAGCCGC
genomic: TCAAGCGTGGCCAGACCATCTCGATCTGCTCCTCGCTGGAGCCCGGCAAGgtgcgttgga ... tggcccgcagGTGCGCCAGGCCAAGATCGCTGAGCTGTTCGTGTACGACAACTTCAGCCGC
EST: gi|14236860|gb|BG855676.1|BG855676
EST:     AAGCGTGGCCAGACCATCTCGATCTGCTCCTCGCTGGAGCCCGGCAAG                         GTGCGCCAGGCCAAGATCGCTGAGCTGTTCGTGTACGACAACTTCAGCCGC
genomic: AAGCGTGGCCAGACCATCTCGATCTGCTCCTCGCTGGAGCCCGGCAAGgtgcgttgga ... tggcccgcagGTGCGCCAGGCCAAGATCGCTGAGCTGTTCGTGTACGACAACTTCAGCCGC
EST: gi|161795524|gb|FC079708.1|FC079708
EST:     TCAAGCGTGGCCAGACCATCTCGATCTGCTCCTCGCTGGAGCCCGGCAAG                         GTGCGCCAGGCCAAGATCGCTGAGCTGTTCGTGTACGACAACTTCAGCCGC
genomic: TCAAGCGTGGCCAGACCATCTCGATCTGCTCCTCGCTGGAGCCCGGCAAGgtgcgttgga ... tggcccgcagGTGCGCCAGGCCAAGATCGCTGAGCTGTTCGTGTACGACAACTTCAGCCGC
EST: gi|34984913|gb|CF558830.1|CF558830
EST:     CGATCTGCTCCTCGCTGGAGCCCGGCAAG                         GTGCGCCAGCCCAAGATCGCTGAGCTGTTCGTGTACGACAACTTCAGCCGC
genomic: CGATCTGCTCCTCGCTGGAGCCCGGCAAGgtgcgttgga ... tggcccgcagGTGCGCCAGGCCAAGATCGCTGAGCTGTTCGTGTACGACAACTTCAGCCGC
EST: gi|34985245|gb|CF559162.1|CF559162
EST:     TCAAGCGTGGCCAGACCATCTCGATCTGCTCCTCGCTGGAGCCCGGCAAG                         GTGCGCCAGGCCAAGATCGCTGAGCTGTTCGTGTACGACAACTTCAGCCGC
genomic: TCAAGCGTGGCCAGACCATCTCGATCTGCTCCTCGCTGGAGCCCGGCAAGgtgcgttgga ... tggcccgcagGTGCGCCAGGCCAAGATCGCTGAGCTGTTCGTGTACGACAACTTCAGCCGC
EST: gi|34986186|gb|CF560103.1|CF560103
EST:     TCAAGCGTGGCCAGACCATCTCGATCTGCTCCTCGCTGGAGCCCGGCAAG                         GTGCGCCAGGCCAAGATCGCTGAGCTGTTCGTGTACGACAACTTCAGCCGC
genomic: TCAAGCGTGGCCAGACCATCTCGATCTGCTCCTCGCTGGAGCCCGGCAAGgtgcgttgga ... tggcccgcagGTGCGCCAGGCCAAGATCGCTGAGCTGTTCGTGTACGACAACTTCAGCCGC
EST: gi|22068537|gb|BQ818437.1|BQ818437
EST:     TCAAGCGTGGCCAGACCATCTCGATCTGCTCCTCGCTGGAGCCCGGCAAG                         GTGCGCCAGGCCAAGATCGCTGAGCTGTTCGTGTACGACAACTTCAG
genomic: TCAAGCGTGGCCAGACCATCTCGATCTGCTCCTCGCTGGAGCCCGGCAAGgtgcgttgga ... tggcccgcagGTGCGCCAGGCCAAGATCGCTGAGCTGTTCGTGTACGACAACTTCAG
EST: gi|34985816|gb|CF559733.1|CF559733
EST:     TCAAGCGTGGCCAGACCATCTCGATCTGCTCCTCGCTGGAGCCCGGCAAG                         GTGCGCCAGGCCAAGATCGCTGAGCTGTTCGTGTACGACAACTTCAGCCGC
genomic: TCAAGCGTGGCCAGACCATCTCGATCTGCTCCTCGCTGGAGCCCGGCAAGgtgcgttgga ... tggcccgcagGTGCGCCAGGCCAAGATCGCTGAGCTGTTCGTGTACGACAACTTCAGCCGC
EST: gi|34988414|gb|CF562331.1|CF562331
EST:     TCAAGCGTGGCCAGACCATCTCGATCTGCTCCTCGCTGGAGCCCGGCAAG                         GTGCGCCAGGCCAAGATCGCTGAGCTGTTCGTGTACGACAACTTCAGCCGC
genomic: TCAAGCGTGGCCAGACCATCTCGATCTGCTCCTCGCTGGAGCCCGGCAAGgtgcgttgga ... tggcccgcagGTGCGCCAGGCCAAGATCGCTGAGCTGTTCGTGTACGACAACTTCAGCCGC
EST: gi|34981931|gb|CF555848.1|CF555848
EST:     TCAAGCGTGGCCAGACCATCTCGATCTGCTCCTCGCTGGAGCCCGGCAAG                         GTGCGCCAGGCCAAGATCGCTGAGCTGTTCGTGTACGACAACTTCAGCCGC
genomic: TCAAGCGTGGCCAGACCATCTCGATCTGCTCCTCGCTGGAGCCCGGCAAGgtgcgttgga ... tggcccgcagGTGCGCCAGGCCAAGATCGCTGAGCTGTTCGTGTACGACAACTTCAGCCGC
EST: gi|34984915|gb|CF558832.1|CF558832
EST:     TCAAGCGTGGCCAGACCATCTCGATCTGCTCCTCGCTGGAGCCCGGCAAG                         GTGCGCCAGGCCAAGATCGCTGAGCTGTTCGTGTACGACAACTTCAGCCGC
genomic: TCAAGCGTGGCCAGACCATCTCGATCTGCTCCTCGCTGGAGCCCGGCAAGgtgcgttgga ... tggcccgcagGTGCGCCAGGCCAAGATCGCTGAGCTGTTCGTGTACGACAACTTCAGCCGC
EST: gi|10776843|gb|AV633523.1|AV633523
EST:     TCAAGCGTGGCCAGACCATCTCGATCTGCTCCTCGCTGGAGCCCGGCAAG                         GTGCGCCAGGCCAAGATCGCTGAGCTGTTCGTGTACGACAACTTCAGCCGC
genomic: TCAAGCGTGGCCAGACCATCTCGATCTGCTCCTCGCTGGAGCCCGGCAAGgtgcgttgga ... tggcccgcagGTGCGCCAGGCCAAGATCGCTGAGCTGTTCGTGTACGACAACTTCAGCCGC
EST: gi|6547128|gb|AV392912.1|AV392912
EST:     CTCGCTGGAGCCCGGCAAG                         GTGCGCCAGGCCAAGATCGCTGAGCTGTTCGTGTACGGACAACTTCAGCCG
genomic: CTCGCTGGAGCCCGGCAAGgtgcgttgga ... tggcccgcagGTGCGCCAGGCCAAGATCGCTGAGCTGTTCGTGTAC-GACAACTTCAGCCG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

atgttgtttgccctaaccgcatgccttgcgttccccaatccattttggcccgcagGTGCGCCAGGCCAAGATCGCTGAGCTGTTCGTGTACGACAACTTCAGCCGCGTGCCGGTCGATGAGGTGGCGGCTGGTGACATCTGTGCGCTGTCGGGCA
          ccctaac  putative branch site (score: 2)
                                      tccatttt  putative PPT
                                         atttt  TA-rich tract