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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AACATCATTGATACGCCCGGCCACGCCGATTTCGGCGGCGAGGTGGAGCGCGTGATCAACATGTGCGACGGCGTGCTGCTGCTGGTGGACTCCGTGGAGGgtgagttccaagcacaagagcggcggctagctttcaggcagcgactgtgctggagacggtgctgaggttgcccccgcggcctgtcaaagcttggccaacctgcaaaccttgacccttggctcccctggctcggcgcacccgcag

Basic information

species Chlamydomonas reinhardtii
transcript EDO98397
intron # 6
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|10785510|gb|AV642182.1|AV642182
EST:     CGTGATCAACATGTGCGACGGCGTGCTGCTGCTGGTGGACTCCGTGGAGG                         GCCCCATGCCCCAGACCCGCTTCGTGCTGCGCAAGGCGCT
genomic: CGTGATCAACATGTGCGACGGCGTGCTGCTGCTGGTGGACTCCGTGGAGGgtgagttcca ... gcacccgcagGCCCCATGCCCCAGACCCGCTTCGTGCTGCGCAAGGCGCT
EST: gi|34985800|gb|CF559717.1|CF559717
EST:     TCAACATGTGCGACGGCGTGCTGCTGCTGGTGGACTCCGTGGAGG                         GCCCCATGCCCCAGACCCGCTTCGTGCTGCGCAAGGCGCTGGAGCTGCAGA
genomic: TCAACATGTGCGACGGCGTGCTGCTGCTGGTGGACTCCGTGGAGGgtgagttcca ... gcacccgcagGCCCCATGCCCCAGACCCGCTTCGTGCTGCGCAAGGCGCTGGAGCTGCAGA
EST: gi|34983512|gb|CF557429.1|CF557429
EST:     TCAACATGTGCGACGGCGTCCTGCTGCTGGTGGACTCCGTGGAGG                         GCCCCATGCCCCAGACCCGCTTCGTGCTGCGCAAGGCGCTGGAGCTGCAGA
genomic: TCAACATGTGCGACGGCGTGCTGCTGCTGGTGGACTCCGTGGAGGgtgagttcca ... gcacccgcagGCCCCATGCCCCAGACCCGCTTCGTGCTGCGCAAGGCGCTGGAGCTGCAGA
EST: gi|161813272|gb|FC101441.1|FC101441
EST:     CGTGATCAACATGTGCGACGGCGTGCTGCTGCTGGTGGACTCCGTGGAGG                         GCCCCATGCCCCAGACCCGCTTCGTGCTGCGCAAGGCGCTGGAGCTGCAGA
genomic: CGTGATCAACATGTGCGACGGCGTGCTGCTGCTGGTGGACTCCGTGGAGGgtgagttcca ... gcacccgcagGCCCCATGCCCCAGACCCGCTTCGTGCTGCGCAAGGCGCTGGAGCTGCAGA
EST: gi|10789572|gb|AV645301.1|AV645301
EST:     CGTGATCAACATGTGCGACGGCGTGCTGCTGCTGGTGGACTCCGTGGAGG                         GCCCCATGCCCCAGACCCGCTTCGTGCTGCGCAAGGCGCTGGAGCTGCAGA
genomic: CGTGATCAACATGTGCGACGGCGTGCTGCTGCTGGTGGACTCCGTGGAGGgtgagttcca ... gcacccgcagGCCCCATGCCCCAGACCCGCTTCGTGCTGCGCAAGGCGCTGGAGCTGCAGA
EST: gi|10783531|gb|AV640203.1|AV640203
EST:     GATCAACATGTGCGACGGCGTGCTGCTGCTGGTGGACTCCGTGGAGG                         GCCCCATGCCCCAGACCCGCTTGGTGCTGCGCAAGGCGCTGGAGCTGCAAA
genomic: GATCAACATGTGCGACGGCGTGCTGCTGCTGGTGGACTCCGTGGAGGgtgagttcca ... gcacccgcagGCCCCATGCCCCAGACCCGCTTCGTGCTGCGCAAGGCGCTGGAGCTGCAGA
EST: gi|10780283|gb|AV636963.1|AV636963
EST:     CGTGATCAACATGTGCGACGGCGTGCTGCTGCTGGTGGACTCCGTGGAGG                         GCCCCATGCCCCAGACCCGCTTCGTGCTGCGCAAGGCGCTGGAGCTGCAGA
genomic: CGTGATCAACATGTGCGACGGCGTGCTGCTGCTGGTGGACTCCGTGGAGGgtgagttcca ... gcacccgcagGCCCCATGCCCCAGACCCGCTTCGTGCTGCGCAAGGCGCTGGAGCTGCAGA
EST: gi|49468183|gb|BP096044.1|BP096044
EST:     CGTGATCAACATGTGCGACGGCGTGCTGCTGCTGGTGGACTCCGTGGAGG                         GCCCCATGCCCCAGACCCGCTTCGTGCTGCGCAAGGCGCTGGAGCTGCAGA
genomic: CGTGATCAACATGTGCGACGGCGTGCTGCTGCTGGTGGACTCCGTGGAGGgtgagttcca ... gcacccgcagGCCCCATGCCCCAGACCCGCTTCGTGCTGCGCAAGGCGCTGGAGCTGCAGA
EST: gi|10786981|gb|AV643653.1|AV643653
EST:     CGTGATCAACATGTGCGACGGCGTGCTGCTGCTGGTGGACTCCGTGGAGG                         GCCCCATGCCCCAGACCCGCTTCGTGCTGCGCAAGGCGCTGGAGCTGCAGA
genomic: CGTGATCAACATGTGCGACGGCGTGCTGCTGCTGGTGGACTCCGTGGAGGgtgagttcca ... gcacccgcagGCCCCATGCCCCAGACCCGCTTCGTGCTGCGCAAGGCGCTGGAGCTGCAGA
EST: gi|22068537|gb|BQ818437.1|BQ818437
EST:     CGTGATCAACATGTGCGACGGCGTGCTGCTGCTGGTGGACTCCGTGGAGG                         GCCCCATGCCCCAGACCCGCTTCGTGCTGCGCAAGGCGCTGGAGCTGCAGA
genomic: CGTGATCAACATGTGCGACGGCGTGCTGCTGCTGGTGGACTCCGTGGAGGgtgagttcca ... gcacccgcagGCCCCATGCCCCAGACCCGCTTCGTGCTGCGCAAGGCGCTGGAGCTGCAGA
EST: gi|34987995|gb|CF561912.1|CF561912
EST:     TCAACATGTGCGACGGCGTGCTGCTGCTGGTGGACTCCGTGGAGG                         GCCCCATGCCCCAGACCCGCTTCGTGCTGCGCAAGGCGCTGGAGCTGCAGA
genomic: TCAACATGTGCGACGGCGTGCTGCTGCTGGTGGACTCCGTGGAGGgtgagttcca ... gcacccgcagGCCCCATGCCCCAGACCCGCTTCGTGCTGCGCAAGGCGCTGGAGCTGCAGA
EST: gi|23360235|gb|BU648055.1|BU648055
EST:     CGTGATCAACATGTGCGACGGCGTGCTGCTGCTGGTGGACTCCGTGGAGG                         GCCCCATGCCCCAGACCCGCTTCGTGCTGCGCAAGGCGCTGGAGCTGCAGA
genomic: CGTGATCAACATGTGCGACGGCGTGCTGCTGCTGGTGGACTCCGTGGAGGgtgagttcca ... gcacccgcagGCCCCATGCCCCAGACCCGCTTCGTGCTGCGCAAGGCGCTGGAGCTGCAGA

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
AACATCATTGATACGCCCGGCCACGCCGATTTCGGCGGCGAGGTGGAGCGCGTGATCAACATGTGCGACGGCGTGCTGCTGCTGGTGGACTCCGTGGAGGgtgagttccaagcacaagagcggcggctagctttcaggcagcgactgtgctggagacggtgctgaggttgcccccgcggcctgtcaaagcttggccaacctgcaaaccttgacccttggctcccctggctcggcgcacccgcag

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GCTGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG