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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCCGCCCGCCCCGACTGGGTCATTGACTCAACCTTCGAGCTGTTCATGGACTTGGGCGCTTCCGACGAGCTGTGCGAGTTCCCCGTGGTTTACGCCTCGGgtgcgtggtgtttgggctcggccggcagagctagcggtcaggtgtgggcgggtggcgacagggaccacgggcttgggttcaggggctgctggatgcatgg...

Basic information

species Chlamydomonas reinhardtii
transcript EDO98397
intron # 7
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|10784235|gb|AV640907.1|AV640907
EST:     CCGTGGTTTACGCCTCGG                         GTGTGAATGGCATTGCCGGCATGACCCCGGAGACGCTGGCTGAGGACCTGG
genomic: CCGTGGTTTACGCCTCGGgtgcgtggtg ... tggaccgcagGTGTGAATGGCATTGCCGGCATGACCCCGGAGACGCTGGCTGAGGACCTGG
EST: gi|34988709|gb|CF562626.1|CF562626
EST:     CTTGGGCGCTTCCGACGAGCTGTGCGAGTTCCCCGTGGTTTACGCCTCGG                         GTGTGAATGGCATTGCCGGCATGACCCCGGAGACGCTGGCTGAGGACCTGG
genomic: CTTGGGCGCTTCCGACGAGCTGTGCGAGTTCCCCGTGGTTTACGCCTCGGgtgcgtggtg ... tggaccgcagGTGTGAATGGCATTGCCGGCATGACCCCGGAGACGCTGGCTGAGGACCTGG
EST: gi|34985800|gb|CF559717.1|CF559717
EST:     CTTGGGCGCTTCCGACGAGCTGTGCGAGTTCCCCGTGGTTTACGCCTCGG                         GTGTGAATGGCATTGCCGGCATGACCCCGGAGACGCTGGCTGAGGACCTGG
genomic: CTTGGGCGCTTCCGACGAGCTGTGCGAGTTCCCCGTGGTTTACGCCTCGGgtgcgtggtg ... tggaccgcagGTGTGAATGGCATTGCCGGCATGACCCCGGAGACGCTGGCTGAGGACCTGG
EST: gi|34983512|gb|CF557429.1|CF557429
EST:     CTTGGGCGCTTCCGACGAGCTGTGCGAGTTCCCCGTGGTTTACGCCTCGG                         GTGTGAATGGCATTGCCGGCATGACCCCGGAGACGCTGGCTGAGGACCTGG
genomic: CTTGGGCGCTTCCGACGAGCTGTGCGAGTTCCCCGTGGTTTACGCCTCGGgtgcgtggtg ... tggaccgcagGTGTGAATGGCATTGCCGGCATGACCCCGGAGACGCTGGCTGAGGACCTGG
EST: gi|161813272|gb|FC101441.1|FC101441
EST:     CTTGGGCGCTTCCGACGAGCTGTGCGAGTTCCCCGTGGTTTACGCCTCCG                         GTGTGAATGGCATTGCCGGCATGACCCCGGAGACGCTGGCTGAGGACCTGG
genomic: CTTGGGCGCTTCCGACGAGCTGTGCGAGTTCCCCGTGGTTTACGCCTCGGgtgcgtggtg ... tggaccgcagGTGTGAATGGCATTGCCGGCATGACCCCGGAGACGCTGGCTGAGGACCTGG
EST: gi|22075814|gb|BQ824590.1|BQ824590
EST:     TCTGGGCGCTTCCGACGAGCTGTGCGAGTTCCCCGTGGTTTACGCCTCGG                         GTGTGAATGGCATTGCCGGCATGACCCCGGAGACGCTGGCTGAGGACCTGG
genomic: T-TGGGCGCTTCCGACGAGCTGTGCGAGTTCCCCGTGGTTTACGCCTCGGgtgcgtggtg ... tggaccgcagGTGTGAATGGCATTGCCGGCATGACCCCGGAGACGCTGGCTGAGGACCTGG
EST: gi|10125782|gb|BE724486.1|BE724486
EST:     CTTGGGCGCTTCCGACGAGCTGTGCGAGTTCCCCGTGGTTTACGCCTCGG                         GTGTGAATGGCATTGCCGGCATGACCCCGGAGACGCTGGCTGAGGACCTGG
genomic: CTTGGGCGCTTCCGACGAGCTGTGCGAGTTCCCCGTGGTTTACGCCTCGGgtgcgtggtg ... tggaccgcagGTGTGAATGGCATTGCCGGCATGACCCCGGAGACGCTGGCTGAGGACCTGG
EST: gi|10785257|gb|AV641929.1|AV641929
EST:     CCGACGAGCTGTGCGAGTTCCCCGTGGTTTACGCCTCGG                         GTGTGAATGGCATTGCCGGCATGACCCCGGAGACGCTGGCTGAGGACCTGG
genomic: CCGACGAGCTGTGCGAGTTCCCCGTGGTTTACGCCTCGGgtgcgtggtg ... tggaccgcagGTGTGAATGGCATTGCCGGCATGACCCCGGAGACGCTGGCTGAGGACCTGG
EST: gi|10780283|gb|AV636963.1|AV636963
EST:     CTTGGGCGCTTCCGACGAGCTGTGCGAGTTCCCCGTGGTTTACGCCTCGG                         GTGTGAATGGC
genomic: CTTGGGCGCTTCCGACGAGCTGTGCGAGTTCCCCGTGGTTTACGCCTCGGgtgcgtggtg ... tggaccgcagGTGTGAATGGC
EST: gi|34985817|gb|CF559734.1|CF559734
EST:     CTTGGGCGCTTCCGACGAGCTGTGCGAGTTCCCCGTGGTTTACGCCTCGG                         GTGTGAATGGCATTGCCGGCATGACCCCGGAGACGCTGGCTGAGGACCTGG
genomic: CTTGGGCGCTTCCGACGAGCTGTGCGAGTTCCCCGTGGTTTACGCCTCGGgtgcgtggtg ... tggaccgcagGTGTGAATGGCATTGCCGGCATGACCCCGGAGACGCTGGCTGAGGACCTGG
EST: gi|34984373|gb|CF558290.1|CF558290
EST:     CTTGGGCGCTTCCGACGAGCTGTGCGAGTTCCCCGTGGTTTACGCCTCGG                         GTGTGAATGGCATTGCCGGCATGACCCCGGAGACGCTGGCTGAGGACCTGG
genomic: CTTGGGCGCTTCCGACGAGCTGTGCGAGTTCCCCGTGGTTTACGCCTCGGgtgcgtggtg ... tggaccgcagGTGTGAATGGCATTGCCGGCATGACCCCGGAGACGCTGGCTGAGGACCTGG
EST: gi|34986186|gb|CF560103.1|CF560103
EST:     CTTGGGCGCTTCCGACGAGCTGTGCGAGTTCCCCGTGGTTTACGCCTCGG                         GTGTGAATGGCATTGCCGGCATGACCCCGGAGACGCTGGCTGAGGACCTGG
genomic: CTTGGGCGCTTCCGACGAGCTGTGCGAGTTCCCCGTGGTTTACGCCTCGGgtgcgtggtg ... tggaccgcagGTGTGAATGGCATTGCCGGCATGACCCCGGAGACGCTGGCTGAGGACCTGG
EST: gi|22068537|gb|BQ818437.1|BQ818437
EST:     CTTGGGCGCTTCCGACGAGCTGTGCGAGTTCCCCGTGGTTTACGCCTCGG                         GTGTGAATGGCATTGCCGGCATGACCCCGGAGACGCTGGCTGAGGACCTGG
genomic: CTTGGGCGCTTCCGACGAGCTGTGCGAGTTCCCCGTGGTTTACGCCTCGGgtgcgtggtg ... tggaccgcagGTGTGAATGGCATTGCCGGCATGACCCCGGAGACGCTGGCTGAGGACCTGG
EST: gi|34988414|gb|CF562331.1|CF562331
EST:     CTTGGGCGCTTCCGACGAGCTGTGCGAGTTCCCCGTGGTTTACGCCTCGG                         GTGTGAATGGCATTGCCGGCATGACCCCGGAGACGCTGGCTGAGGACCTGG
genomic: CTTGGGCGCTTCCGACGAGCTGTGCGAGTTCCCCGTGGTTTACGCCTCGGgtgcgtggtg ... tggaccgcagGTGTGAATGGCATTGCCGGCATGACCCCGGAGACGCTGGCTGAGGACCTGG
EST: gi|34987995|gb|CF561912.1|CF561912
EST:     CTTGGGCGCTTCCGACGAGCTGTGCGAGTTCCCCGTGGTTTACGCCTCGG                         GTGTGAATGGCATTGCCGGCATGACCCCG
genomic: CTTGGGCGCTTCCGACGAGCTGTGCGAGTTCCCCGTGGTTTACGCCTCGGgtgcgtggtg ... tggaccgcagGTGTGAATGGCATTGCCGGCATGACCCCG

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
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---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GCCGCCCGCCCCGACTGGGTCATTGACTCAACCTTCGAGCTGTTCATGGACTTGGGCGCTTCCGACGAGCTGTGCGAGTTCCCCGTGGTTTACGCCTCGGgtgcgtggtgtttgggctcggccggcagagctagcggtcaggtgtgggcgggtggcgacagggaccacgggcttgggttcaggggctgctggatgcatgg

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