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TGACGACCTGATCCGCCAGTACCGCAAGCAGCATGGCTTTAGCCGTGTAGTGGCGGGTCGCGGGCTGCAGCTGGGCGACACACTGGTCATTGACCTGGAGgtggggtgtttgtaggaggtttgttaggggaatgcagcggatgagaggcagtgtttttattttgggtaataccattactttccggtaataaatccggagg...
species | Chlamydomonas reinhardtii |
transcript | EDO98211 |
intron # | 9 |
splice site | 5' |
intron type | U2 |
EST: TGGCGGGTCGCGGGCTGCAGCTGGGCGACACACTGGTCATTGACCTGGAG ATCACTTCAAAGGCCACTGGCCAGGCACTGCCCGGCCTCACCCATAAGCGCEST: gi|16432965|gb|BI998191.1|BI998191
genomic: TGGCGGGTCGCGGGCTGCAGCTGGGCGACACACTGGTCATTGACCTGGAGgtggggtgtt ... tcctatccagATCACTTCAAAGGCCACTGGCCAGGCACTGCCCGGCCTCACCCATAAGCGC
EST: TGGCGGGTCGCGGGCTGCAGCTGGGCGACACACTGGTCATTGACCTGGAG ATCACTTCAAAGGCCACTGGCCAGGCACTGCCCGGCCTCACCCATAAGCGCEST: gi|15697032|gb|BI721337.1|BI721337
genomic: TGGCGGGTCGCGGGCTGCAGCTGGGCGACACACTGGTCATTGACCTGGAGgtggggtgtt ... tcctatccagATCACTTCAAAGGCCACTGGCCAGGCACTGCCCGGCCTCACCCATAAGCGC
EST: TGGCGGGTCGCGGGCTGCAGCTGGGCGACACACTGGTCATTGACCTGGAG ATCACTTCAAAGGCCACTGGCCAGGCAC
genomic: TGGCGGGTCGCGGGCTGCAGCTGGGCGACACACTGGTCATTGACCTGGAGgtggggtgtt ... tcctatccagATCACTTCAAAGGCCACTGGCCAGGCAC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TGACGACCTGATCCGCCAGTACCGCAAGCAGCATGGCTTTAGCCGTGTAGTGGCGGGTCGCGGGCTGCAGCTGGGCGACACACTGGTCATTGACCTGGAGgtggggtgtttgtaggaggtttgttaggggaatgcagcggatgagaggcagtgtttttattttgggtaataccattactttccggtaataaatccggagg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgtttgt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tttgtta
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gcagtgt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tttattt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgggtaa