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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CGTGATGTGGTTGGGCAGCTGAAGGGTTGGCAGGCGGGCAAGCCCCTGCCGCTGTCCATGGTCATCCAGCAGgtgggaaaactggaggcagcaacagatatagtgggtcagcagccgagcttaagggttctagcaagatttagtacagctggccatatgtgtgtgcgtgtgt...

Basic information

species Chlamydomonas reinhardtii
transcript EDO98211
intron # 4
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|14235410|gb|BG854226.1|BG854226
EST:     AGGGTTGGCAGGCGGGCAAGCCCCTGCCGCTGTCCATGGTCATCCAGCAG                         GTTGGTGGCCAGAACAAGTTCAAGACGTTCTGCCTGGAGGAGCTGCTGCTA
genomic: AGGGTTGGCAGGCGGGCAAGCCCCTGCCGCTGTCCATGGTCATCCAGCAGgtgggaaaac ... tctggtgtagGTTGGTGGCCAGAACAAGTTCAAGACGTTCTGCCTGGAGGAGCTGCTGCTA
EST: gi|22067707|gb|BQ817769.1|BQ817769
EST:     AGGGTTGGCAGGCGGGCAAGCCCCTGCCGCTGTCCATGGTCATCCAGCAG                         GTTGGTGGCCAGAACAAGTTCAAGACGTTCTGCCTGGAGGAGCTGCTGCTA
genomic: AGGGTTGGCAGGCGGGCAAGCCCCTGCCGCTGTCCATGGTCATCCAGCAGgtgggaaaac ... tctggtgtagGTTGGTGGCCAGAACAAGTTCAAGACGTTCTGCCTGGAGGAGCTGCTGCTA
EST: gi|15693547|gb|BI717852.1|BI717852
EST:     AGGGTTGGCAGGCGGGCAAGCCCCTGCCGCTGTCCATGGTCATCCAGCAG                         GTTGGTGGCCAGAACAAGTTCAAGACGTTCTGCCTGGAGGAGCTGCTGCTA
genomic: AGGGTTGGCAGGCGGGCAAGCCCCTGCCGCTGTCCATGGTCATCCAGCAGgtgggaaaac ... tctggtgtagGTTGGTGGCCAGAACAAGTTCAAGACGTTCTGCCTGGAGGAGCTGCTGCTA
EST: gi|15693557|gb|BI717862.1|BI717862
EST:     AGGGTTGGCAGGCGGGCAAGCCCCTGCCGCTGTCCATGGTCATCCAGCAG                         GTTGGTGGCCAGAACAAGTTCAAGACGTTCTGCCTGGAGGAGCTGCTGC
genomic: AGGGTTGGCAGGCGGGCAAGCCCCTGCCGCTGTCCATGGTCATCCAGCAGgtgggaaaac ... tctggtgtagGTTGGTGGCCAGAACAAGTTCAAGACGTTCTGCCTGGAGGAGCTGCTGC
EST: gi|16435939|gb|BM001159.1|BM001159
EST:     AGGGTTGGCAGGCGGGCAAGCCCCTGCCGCTGTCCATGGTCATCCAGCAG                         GTTGGTGGCCAGAACAAGTTCAAGACGTTCTGCCTGGAGGAGCTGCTGCT
genomic: AGGGTTGGCAGGCGGGCAAGCCCCTGCCGCTGTCCATGGTCATCCAGCAGgtgggaaaac ... tctggtgtagGTTGGTGGCCAGAACAAGTTCAAGACGTTCTGCCTGGAGGAGCTGCTGCT
EST: gi|14236379|gb|BG855195.1|BG855195
EST:     AGGGTTGGCAGGCGGGCAAGCCCCTGCCGCTGTCCATGGTCATCCAGCAG                         GTTTGGTGGCCAGAACAAGTTCAAGACGTTCTGCCTGGAGGAGCTGCTGCT
genomic: AGGGTTGGCAGGCGGGCAAGCCCCTGCCGCTGTCCATGGTCATCCAGCAGgtgggaaaac ... tctggtgtagGTT-GGTGGCCAGAACAAGTTCAAGACGTTCTGCCTGGAGGAGCTGCTGCT

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
CGTGATGTGGTTGGGCAGCTGAAGGGTTGGCAGGCGGGCAAGCCCCTGCCGCTGTCCATGGTCATCCAGCAGgtgggaaaactggaggcagcaacagatatagtgggtcagcagccgagcttaagggttctagcaagatttagtacagctggccatatgtgtgtgcgtgtgt

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -agcaaca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgggtca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -taagggt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgtgtgt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gcgtgtg