1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' |
...tgtgtgcagggggcaggggtagcttgctagcagcaagtttgggagcacagagctgaatgaacttgctctgctgtttgctttgtgctgtaatctggtgtagGTTGGTGGCCAGAACAAGTTCAAGACGTTCTGCCTGGAGGAGCTGCTGCTAGAGGCGCTGCCCAAG
species | Chlamydomonas reinhardtii |
transcript | EDO98211 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: AGGGTTGGCAGGCGGGCAAGCCCCTGCCGCTGTCCATGGTCATCCAGCAG GTTGGTGGCCAGAACAAGTTCAAGACGTTCTGCCTGGAGGAGCTGCTGCTAEST: gi|22067707|gb|BQ817769.1|BQ817769
genomic: AGGGTTGGCAGGCGGGCAAGCCCCTGCCGCTGTCCATGGTCATCCAGCAGgtgggaaaac ... tctggtgtagGTTGGTGGCCAGAACAAGTTCAAGACGTTCTGCCTGGAGGAGCTGCTGCTA
EST: AGGGTTGGCAGGCGGGCAAGCCCCTGCCGCTGTCCATGGTCATCCAGCAG GTTGGTGGCCAGAACAAGTTCAAGACGTTCTGCCTGGAGGAGCTGCTGCTAEST: gi|15693547|gb|BI717852.1|BI717852
genomic: AGGGTTGGCAGGCGGGCAAGCCCCTGCCGCTGTCCATGGTCATCCAGCAGgtgggaaaac ... tctggtgtagGTTGGTGGCCAGAACAAGTTCAAGACGTTCTGCCTGGAGGAGCTGCTGCTA
EST: AGGGTTGGCAGGCGGGCAAGCCCCTGCCGCTGTCCATGGTCATCCAGCAG GTTGGTGGCCAGAACAAGTTCAAGACGTTCTGCCTGGAGGAGCTGCTGCTAEST: gi|15693557|gb|BI717862.1|BI717862
genomic: AGGGTTGGCAGGCGGGCAAGCCCCTGCCGCTGTCCATGGTCATCCAGCAGgtgggaaaac ... tctggtgtagGTTGGTGGCCAGAACAAGTTCAAGACGTTCTGCCTGGAGGAGCTGCTGCTA
EST: AGGGTTGGCAGGCGGGCAAGCCCCTGCCGCTGTCCATGGTCATCCAGCAG GTTGGTGGCCAGAACAAGTTCAAGACGTTCTGCCTGGAGGAGCTGCTGCEST: gi|16435939|gb|BM001159.1|BM001159
genomic: AGGGTTGGCAGGCGGGCAAGCCCCTGCCGCTGTCCATGGTCATCCAGCAGgtgggaaaac ... tctggtgtagGTTGGTGGCCAGAACAAGTTCAAGACGTTCTGCCTGGAGGAGCTGCTGC
EST: AGGGTTGGCAGGCGGGCAAGCCCCTGCCGCTGTCCATGGTCATCCAGCAG GTTGGTGGCCAGAACAAGTTCAAGACGTTCTGCCTGGAGGAGCTGCTGCTEST: gi|14236379|gb|BG855195.1|BG855195
genomic: AGGGTTGGCAGGCGGGCAAGCCCCTGCCGCTGTCCATGGTCATCCAGCAGgtgggaaaac ... tctggtgtagGTTGGTGGCCAGAACAAGTTCAAGACGTTCTGCCTGGAGGAGCTGCTGCT
EST: AGGGTTGGCAGGCGGGCAAGCCCCTGCCGCTGTCCATGGTCATCCAGCAG GTTTGGTGGCCAGAACAAGTTCAAGACGTTCTGCCTGGAGGAGCTGCTGCT
genomic: AGGGTTGGCAGGCGGGCAAGCCCCTGCCGCTGTCCATGGTCATCCAGCAGgtgggaaaac ... tctggtgtagGTT-GGTGGCCAGAACAAGTTCAAGACGTTCTGCCTGGAGGAGCTGCTGCT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tgtgtgcagggggcaggggtagcttgctagcagcaagtttgggagcacagagctgaatgaacttgctctgctgtttgctttgtgctgtaatctggtgtagGTTGGTGGCCAGAACAAGTTCAAGACGTTCTGCCTGGAGGAGCTGCTGCTAGAGGCGCTGCCCAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT
tgtgtgc
- - - - - - - - - -tagcttg
- - - - - - - - - - - - - - agcagca
- - - - - - - - - - - - - - - - - - gtttggg
- - - - - - - - - - - - - - - - - - - - - - - acagagc
- - - - - - - - - - - - - - - - - - - - - - - - - - -tgaatga
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tttgctt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgtgctg