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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGCTGCCCCCACTGCTACGCCCTGCGCTCGCCGCTCCGTGGATGTGAGCCGCGGTGCGCTGCAGGTCTGTGCTGCTGCTGGAAAGGAGAAGGATGTCAAGgtatgcggctccaagctacacgagttgactggccagcaggcttgtaggaatggaagcaacagggagcaaatgggtggtgaactggtagatgtgtggcttggtagatgaacggtccgcatgcaacactctttgcccgcag

Basic information

species Chlamydomonas reinhardtii
transcript EDO98211
intron # 2
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|22067707|gb|BQ817769.1|BQ817769
EST:     GCGGTGCGCTGCAGGTCTGTGCTGCTGCTGGAAAGGAGAAGGATGTCAAG                         GTCGAAGTGTCAGTGGCGGTCGAGGAGCTTGGCACCTGCAGCCGTTCGGCC
genomic: GCGGTGCGCTGCAGGTCTGTGCTGCTGCTGGAAAGGAGAAGGATGTCAAGgtatgcggct ... ttgcccgcagGTCGAAGTGTCAGTGGCGGTCGAGGAGCTTGGCACCTGCAGCCGTTCGGCC
EST: gi|15693547|gb|BI717852.1|BI717852
EST:     GCGGTGCGCTGCAGGTCTGTGCTGCTGCTGGAAAGGAGAAGGATGTCAAG                         GTCGAAGTGTCAGTGGCGGTCGAGGAGCTTGGCACCTGCAGCCGTTCGGCC
genomic: GCGGTGCGCTGCAGGTCTGTGCTGCTGCTGGAAAGGAGAAGGATGTCAAGgtatgcggct ... ttgcccgcagGTCGAAGTGTCAGTGGCGGTCGAGGAGCTTGGCACCTGCAGCCGTTCGGCC
EST: gi|22076426|gb|BQ825202.1|BQ825202
EST:     GCGGTGCGCTGCAGGTCTGTGCTGCTGCTGGAAAGGAGAAGGATGTCAAG                         GTCGAAGTGTCAGTGGCGGTCGAGGAGCTTGGCACCTGCAGCCGTTCGGCC
genomic: GCGGTGCGCTGCAGGTCTGTGCTGCTGCTGGAAAGGAGAAGGATGTCAAGgtatgcggct ... ttgcccgcagGTCGAAGTGTCAGTGGCGGTCGAGGAGCTTGGCACCTGCAGCCGTTCGGCC
EST: gi|15693557|gb|BI717862.1|BI717862
EST:     GCGGTGCGCTGCAGGTCTGTGCTGCTGCTGGAAAGGAGAAGGATGTCAAG                         GTCGAAGTGTCAGTGGCGGTCGAGGAGCTTGGCACCTGCAGCCGTTCGGCC
genomic: GCGGTGCGCTGCAGGTCTGTGCTGCTGCTGGAAAGGAGAAGGATGTCAAGgtatgcggct ... ttgcccgcagGTCGAAGTGTCAGTGGCGGTCGAGGAGCTTGGCACCTGCAGCCGTTCGGCC
EST: gi|16435939|gb|BM001159.1|BM001159
EST:     GCGGTGCGCTGCAGGTCTGTGCTGCTGCTGGAAAGGAGAAGGATGTCAAG                         GTCGAAGTGTCAGTGGCGGTCGAGGAGCTTGGCACCTGCAGCCGTTCGGCC
genomic: GCGGTGCGCTGCAGGTCTGTGCTGCTGCTGGAAAGGAGAAGGATGTCAAGgtatgcggct ... ttgcccgcagGTCGAAGTGTCAGTGGCGGTCGAGGAGCTTGGCACCTGCAGCCGTTCGGCC
EST: gi|15703275|gb|BI727580.1|BI727580
EST:     GCGGTGCGCTGCAGGTCTGTGCTGCTGCTGGAAAGGAGAAGGATGTCAAG                         GTCGAAGTGTCAGTGGCGGTCGAGGAGCTTGGCACCTGCAGCCGTTCGGCC
genomic: GCGGTGCGCTGCAGGTCTGTGCTGCTGCTGGAAAGGAGAAGGATGTCAAGgtatgcggct ... ttgcccgcagGTCGAAGTGTCAGTGGCGGTCGAGGAGCTTGGCACCTGCAGCCGTTCGGCC
EST: gi|14236379|gb|BG855195.1|BG855195
EST:     GCGGTGCGCTGCAGGTCTGTGCTGCTGCTGGAAAGGAGAAGGATGTCAAG                         GTCGAAGTGTCAGTGGCGGTCGAGGAGCTTGGCACCTGCAGCCGTTCGGCC
genomic: GCGGTGCGCTGCAGGTCTGTGCTGCTGCTGGAAAGGAGAAGGATGTCAAGgtatgcggct ... ttgcccgcagGTCGAAGTGTCAGTGGCGGTCGAGGAGCTTGGCACCTGCAGCCGTTCGGCC
EST: gi|10783140|gb|AV639812.1|AV639812
EST:     GCGGTGCGCTGCAGGTCTGTGCTGCTGCTGGAAAGGAGAAGGATGTCAAG                         GTCGAAGTGTCAGTGGC
genomic: GCGGTGCGCTGCAGGTCTGTGCTGCTGCTGGAAAGGAGAAGGATGTCAAGgtatgcggct ... ttgcccgcagGTCGAAGTGTCAGTGGC

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
TGCTGCCCCCACTGCTACGCCCTGCGCTCGCCGCTCCGTGGATGTGAGCCGCGGTGCGCTGCAGGTCTGTGCTGCTGCTGGAAAGGAGAAGGATGTCAAGgtatgcggctccaagctacacgagttgactggccagcaggcttgtaggaatggaagcaacagggagcaaatgggtggtgaactggtagatgtgtggcttggtagatgaacggtccgcatgcaacactctttgcccgcag

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GCTGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AGGATG