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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgggtagactttggtagactggccttgctgctgtcgggatgccagcacatatgtgttggtggcaggtgtgttacctggtgtgtcaatgcactgccactgcattttcgcatccttggattgcctcggtattgactgaccctttgctctccatatggcctgctcttcaacagCGTGATGTGGTTGGGCAGCTGAAGGGTTGGCAGGCGGGCAAGCCCCTGCCGCTGTCCATGGTCATCCAGCAG

Basic information

species Chlamydomonas reinhardtii
transcript EDO98211
intron # 3
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|22067707|gb|BQ817769.1|BQ817769
EST:     CAGCGTCCACTGTGAAGGACATCTTCAAGCGTGGTGTCAAGCGCATTGAG                         CGTGATGTGGTTGGGCAGCTGAAGGGTTGGCAGGCGGGCAAGCCCCTGCCG
genomic: CAGCGTCCACTGTGAAGGACATCTTCAAGCGTGGTGTCAAGCGCATTGAGgtgggtagac ... tcttcaacagCGTGATGTGGTTGGGCAGCTGAAGGGTTGGCAGGCGGGCAAGCCCCTGCCG
EST: gi|15693547|gb|BI717852.1|BI717852
EST:     CAGCGTCCACTGTGAAGGACATCTTCAAGCGTGGTGTCAAGCGCATTGAG                         CGTGATGTGGTTGGGCAGCTGAAGGGTTGGCAGGCGGGCAAGCCCCTGCCG
genomic: CAGCGTCCACTGTGAAGGACATCTTCAAGCGTGGTGTCAAGCGCATTGAGgtgggtagac ... tcttcaacagCGTGATGTGGTTGGGCAGCTGAAGGGTTGGCAGGCGGGCAAGCCCCTGCCG
EST: gi|22076426|gb|BQ825202.1|BQ825202
EST:     CAGCGTCCACTGTGAAGGACATCTTCAAGCGTGGTGTCAAGCGCATTGAG                         CGTGATGTGGTTGGGCAGCTGAAGGGTTGGCAGGCGGGCAAGCCCCTGCCG
genomic: CAGCGTCCACTGTGAAGGACATCTTCAAGCGTGGTGTCAAGCGCATTGAGgtgggtagac ... tcttcaacagCGTGATGTGGTTGGGCAGCTGAAGGGTTGGCAGGCGGGCAAGCCCCTGCCG
EST: gi|15693557|gb|BI717862.1|BI717862
EST:     CAGCGTCCACTGTGAAGGACATCTTCAAGCGTGGTGTCAAGCGCATTGAG                         CGTGATGTGGTTGGGCAGCTGAAGGGTTGGCAGGCGGGCAAGCCCCTGCCG
genomic: CAGCGTCCACTGTGAAGGACATCTTCAAGCGTGGTGTCAAGCGCATTGAGgtgggtagac ... tcttcaacagCGTGATGTGGTTGGGCAGCTGAAGGGTTGGCAGGCGGGCAAGCCCCTGCCG
EST: gi|16435939|gb|BM001159.1|BM001159
EST:     CAGCGTCCACTGTGAAGGACATCTTCAAGCGTGGTGTCAAGCGCATTGAG                         CGTGATGTGGTTGGGCAGCTGAAGGGTTGGCAGGCGGGCAAGCCCCTGCCG
genomic: CAGCGTCCACTGTGAAGGACATCTTCAAGCGTGGTGTCAAGCGCATTGAGgtgggtagac ... tcttcaacagCGTGATGTGGTTGGGCAGCTGAAGGGTTGGCAGGCGGGCAAGCCCCTGCCG
EST: gi|14236379|gb|BG855195.1|BG855195
EST:     CAGCGTCCACTGTGAAGGACATCTTCAAGCGTGGTGTCAAGCGCATTGAG                         CGTGATGTGGTTGGGCAGCTGAAGGGTTGGCAGGCGGGCAAGCCCCTGCCG
genomic: CAGCGTCCACTGTGAAGGACATCTTCAAGCGTGGTGTCAAGCGCATTGAGgtgggtagac ... tcttcaacagCGTGATGTGGTTGGGCAGCTGAAGGGTTGGCAGGCGGGCAAGCCCCTGCCG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gattgcctcggtattgactgaccctttgctctccatatggcctgctcttcaacagCGTGATGTGGTTGGGCAGCTGAAGGGTTGGCAGGCGGGCAAGCCCCTGCCGCTGTCCATGGTCATCCAGCAG
               gactgac  putative branch site (score: 2)
                                        cctgctcttc  putative PPT