1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' |
...cgttgtgtagtgcccggtgcttgcctagttgaggtaccaaacatgaaatggcctgacatgcctacacttgacaaccctaacacccctgtctcccgctcagGCTGTGGGCCAGCCGTTTGACCGTGAGGACATGCTGGATGACGTGCGGGAGACTGTCAAGTCCGTGACCGTCATCGAGTGGCTCAAAGACAACGTCAAGC
species | Chlamydomonas reinhardtii |
transcript | EDO98211 |
intron # | 16 |
splice site | 3' |
intron type | U2 |
EST: AGGACNAGNCGGTGGAGGCGGAGTTTTCGCTACGGGCGCGGCAAATGGAG GCTGTGGGCCAGCCGTTTGACCGTGAGGACATGCTGGATGACGTGCGGGAGEST: gi|14235408|gb|BG854224.1|BG854224
genomic: AGGACGAGGCGGTGGAGGCGGAGTTTTCGCTACGGGCGCGGCAAATGGAGgtgagggcgg ... tcccgctcagGCTGTGGGCCAGCCGTTTGACCGTGAGGACATGCTGGATGACGTGCGGGAG
EST: AGGACAAGGCGGTGGAGGCGGAGTTTTCGCTACGGGCGCGGCAAATGGAG GCTGTGGGCCAGCCGTTTGACCGTGAGGACATGCTGGATGACGTGCGGGAG
genomic: AGGACGAGGCGGTGGAGGCGGAGTTTTCGCTACGGGCGCGGCAAATGGAGgtgagggcgg ... tcccgctcagGCTGTGGGCCAGCCGTTTGACCGTGAGGACATGCTGGATGACGTGCGGGAG
aaatggcctgacatgcctacacttgacaaccctaacacccctgtctcccgctcagGCTGTGGGCCAGCCGTTTGACCGTGAGGACATGCTGGATGACGTGCGGGAGACTGTCAAGTCCGTGACCGTCATCGAGTGGCTCAAAGACAACGTCAAGC
ccctaac putative branch site (score: 2)
cccctgtctcccgctc CT-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| cgttgtgtagtgcccggtgcttgcctagttgaggtaccaaacatgaaatggcctgacatgcctacacttgacaaccctaacacccctgtctcccgctcagGCTGTGGGCCAGCCGTTTGACCGTGAGGACATGCTGGATGACGTGCGGGAGACTGTCAAGTCCGTGACCGTCATCGAGTGGCTCAAAGACAACGTCAAGC
- -tgtgtag
- - - - - - - - gtgcttg
- - - - - - - - - - - - - - - - - - ccaaaca
- - - - - - - - - - - - - - - - - - - - - - - - - - - -acatgcc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -acacttg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - acaaccc