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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatgcggctccaagctacacgagttgactggccagcaggcttgtaggaatggaagcaacagggagcaaatgggtggtgaactggtagatgtgtggcttggtagatgaacggtccgcatgcaacactctttgcccgcagGTCGAAGTGTCAGTGGCGGTCGAGGAGCTTGGCACCTGCAGCCGTTCGGCCATCATCACTGTGCCAGCGTCCACTGTGAAGGACATCTTCAAGCGTGGTG

Basic information

species Chlamydomonas reinhardtii
transcript EDO98211
intron # 2
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|22067707|gb|BQ817769.1|BQ817769
EST:     GCGGTGCGCTGCAGGTCTGTGCTGCTGCTGGAAAGGAGAAGGATGTCAAG                         GTCGAAGTGTCAGTGGCGGTCGAGGAGCTTGGCACCTGCAGCCGTTCGGCC
genomic: GCGGTGCGCTGCAGGTCTGTGCTGCTGCTGGAAAGGAGAAGGATGTCAAGgtatgcggct ... ttgcccgcagGTCGAAGTGTCAGTGGCGGTCGAGGAGCTTGGCACCTGCAGCCGTTCGGCC
EST: gi|15693547|gb|BI717852.1|BI717852
EST:     GCGGTGCGCTGCAGGTCTGTGCTGCTGCTGGAAAGGAGAAGGATGTCAAG                         GTCGAAGTGTCAGTGGCGGTCGAGGAGCTTGGCACCTGCAGCCGTTCGGCC
genomic: GCGGTGCGCTGCAGGTCTGTGCTGCTGCTGGAAAGGAGAAGGATGTCAAGgtatgcggct ... ttgcccgcagGTCGAAGTGTCAGTGGCGGTCGAGGAGCTTGGCACCTGCAGCCGTTCGGCC
EST: gi|22076426|gb|BQ825202.1|BQ825202
EST:     GCGGTGCGCTGCAGGTCTGTGCTGCTGCTGGAAAGGAGAAGGATGTCAAG                         GTCGAAGTGTCAGTGGCGGTCGAGGAGCTTGGCACCTGCAGCCGTTCGGCC
genomic: GCGGTGCGCTGCAGGTCTGTGCTGCTGCTGGAAAGGAGAAGGATGTCAAGgtatgcggct ... ttgcccgcagGTCGAAGTGTCAGTGGCGGTCGAGGAGCTTGGCACCTGCAGCCGTTCGGCC
EST: gi|15693557|gb|BI717862.1|BI717862
EST:     GCGGTGCGCTGCAGGTCTGTGCTGCTGCTGGAAAGGAGAAGGATGTCAAG                         GTCGAAGTGTCAGTGGCGGTCGAGGAGCTTGGCACCTGCAGCCGTTCGGCC
genomic: GCGGTGCGCTGCAGGTCTGTGCTGCTGCTGGAAAGGAGAAGGATGTCAAGgtatgcggct ... ttgcccgcagGTCGAAGTGTCAGTGGCGGTCGAGGAGCTTGGCACCTGCAGCCGTTCGGCC
EST: gi|16435939|gb|BM001159.1|BM001159
EST:     GCGGTGCGCTGCAGGTCTGTGCTGCTGCTGGAAAGGAGAAGGATGTCAAG                         GTCGAAGTGTCAGTGGCGGTCGAGGAGCTTGGCACCTGCAGCCGTTCGGCC
genomic: GCGGTGCGCTGCAGGTCTGTGCTGCTGCTGGAAAGGAGAAGGATGTCAAGgtatgcggct ... ttgcccgcagGTCGAAGTGTCAGTGGCGGTCGAGGAGCTTGGCACCTGCAGCCGTTCGGCC
EST: gi|15703275|gb|BI727580.1|BI727580
EST:     GCGGTGCGCTGCAGGTCTGTGCTGCTGCTGGAAAGGAGAAGGATGTCAAG                         GTCGAAGTGTCAGTGGCGGTCGAGGAGCTTGGCACCTGCAGCCGTTCGGCC
genomic: GCGGTGCGCTGCAGGTCTGTGCTGCTGCTGGAAAGGAGAAGGATGTCAAGgtatgcggct ... ttgcccgcagGTCGAAGTGTCAGTGGCGGTCGAGGAGCTTGGCACCTGCAGCCGTTCGGCC
EST: gi|14236379|gb|BG855195.1|BG855195
EST:     GCGGTGCGCTGCAGGTCTGTGCTGCTGCTGGAAAGGAGAAGGATGTCAAG                         GTCGAAGTGTCAGTGGCGGTCGAGGAGCTTGGCACCTGCAGCCGTTCGGCC
genomic: GCGGTGCGCTGCAGGTCTGTGCTGCTGCTGGAAAGGAGAAGGATGTCAAGgtatgcggct ... ttgcccgcagGTCGAAGTGTCAGTGGCGGTCGAGGAGCTTGGCACCTGCAGCCGTTCGGCC
EST: gi|10783140|gb|AV639812.1|AV639812
EST:     GCGGTGCGCTGCAGGTCTGTGCTGCTGCTGGAAAGGAGAAGGATGTCAAG                         GTCGAAGTGTCAGTGGC
genomic: GCGGTGCGCTGCAGGTCTGTGCTGCTGCTGGAAAGGAGAAGGATGTCAAGgtatgcggct ... ttgcccgcagGTCGAAGTGTCAGTGGC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gtagatgtgtggcttggtagatgaacggtccgcatgcaacactctttgcccgcagGTCGAAGTGTCAGTGGCGGTCGAGGAGCTTGGCACCTGCAGCCGTTCGGCCATCATCACTGTGCCAGCGTCCACTGTGAAGGACATCTTCAAGCGTGGTG
                                         ctctttgccc  CT-rich tract