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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtttgttaagcagggcgcacagccactgcctggaccacctgacagcaaagagtagaggaaacagtgaagccagataaacaggaggaaagtccgtcatgtatggctgcatgctgccatactgcattgcacctaaggctcaatttttgcatggtatcactcacagtataccatatcatttttgctatgctgcagGGACACTGGTGACTTCTCCACGGATGCTGCTGCTGCTGACGACCTGATCCGCCAGTACCGCAAGCAGCATGGCTTTAGCCGTGTAGTGGCGGGTCGCGGG

Basic information

species Chlamydomonas reinhardtii
transcript EDO98211
intron # 8
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|14235410|gb|BG854226.1|BG854226
EST:     CCACCAGTGGTGTGGCGCACGCCCCTGGAGGAGCTGGAGGTGACCATCAG                         GGACACTGGTGACTTCTCCACGGATGCTGCTGCTGCTGACGACCTGATCCG
genomic: CCACCAGTGGTGTGGCGCACGCCCCTGGAGGAGCTGGAGGTGACCATCAGgtttgttaag ... tatgctgcagGGACACTGGTGACTTCTCCACGGATGCTGCTGCTGCTGACGACCTGATCCG
EST: gi|16432965|gb|BI998191.1|BI998191
EST:     CCACCAGTGGTGTGGCGCACGCCCCTGGAGGAGCTGGAGGTGACCATCAG                         GGACACTGGTGACTTCTCCACGGATGCTGCTGCTGCTGACGACCTGATCCG
genomic: CCACCAGTGGTGTGGCGCACGCCCCTGGAGGAGCTGGAGGTGACCATCAGgtttgttaag ... tatgctgcagGGACACTGGTGACTTCTCCACGGATGCTGCTGCTGCTGACGACCTGATCCG
EST: gi|15697032|gb|BI721337.1|BI721337
EST:     CCACCAGTGGTGTGGCGCACGCCCCTGGAGGAGCTGGAGGTGACCATCAG                         GGACACTGGTGACTTCTCCACGGATGCTGCTGCTGCTGACGACCTGATCCG
genomic: CCACCAGTGGTGTGGCGCACGCCCCTGGAGGAGCTGGAGGTGACCATCAGgtttgttaag ... tatgctgcagGGACACTGGTGACTTCTCCACGGATGCTGCTGCTGCTGACGACCTGATCCG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

caatttttgcatggtatcactcacagtataccatatcatttttgctatgctgcagGGACACTGGTGACTTCTCCACGGATGCTGCTGCTGCTGACGACCTGATCCGCCAGTACCGCAAGCAGCATGGCTTTAGCCGTGTAGTGGCGGGTCGCGGG
                 cactcac  putative branch site (score: 2)
                                      tttttgct  putative PPT
                                atatcattttt  TA-rich tract