1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' |
GCCAAAAACATTCAAGCAGAAGAGAGAGGAACAAAGAAAGGCATCTGAAGCTGGTGGAGATACAAAGGCTTGGAATAGTTTATTCATGCGACCCGATACTgtacgtttttcctgtttaaagaatgcatcctttagtgttttttaaatatagcttgcttcatgttttttttcttttcctttttgtgttgtag
species | Arabidopsis thaliana |
transcript | AT4G19610.1 |
intron # | 7 |
splice site | 5' |
intron type | U2 |
EST: CTGGTGGAGATACAAAGGCTTGGAATAGTTTATTCATGCGACCCGATACT ATTCTAGAAAACATAGTCAGGGTGTATGGTGTAAGCAAGAGTGAGTTACTTEST: gi|116458749|gb|EG501341.1|EG501341
genomic: CTGGTGGAGATACAAAGGCTTGGAATAGTTTATTCATGCGACCCGATACTgtacgttttt ... tgtgttgtagATTCTAGAAAACATAGTCAGGGTGTATGGTGTAAGCAAGAGTGAGTTACTT
EST: CTGGTGGAGATACAAAGGCTTGGAATAGTTTATTCATGCGACCCGATACT ATTCTAGAAAACATAGTCAGGGTGTATGGTGTAAGCAAGAGTGAGTTACTTEST: gi|116413076|gb|EG455668.1|EG455668
genomic: CTGGTGGAGATACAAAGGCTTGGAATAGTTTATTCATGCGACCCGATACTgtacgttttt ... tgtgttgtagATTCTAGAAAACATAGTCAGGGTGTATGGTGTAAGCAAGAGTGAGTTACTT
EST: GTGGAGATACAAAGGCTTGGAATAGTTTATTCATGCGACCCGATACT ATTCTAGAAAACATAGTCAGGGTGTATGGTGTAAGCAAGAGTGAGTTACTTEST: gi|116413073|gb|EG455665.1|EG455665
genomic: GTGGAGATACAAAGGCTTGGAATAGTTTATTCATGCGACCCGATACTgtacgttttt ... tgtgttgtagATTCTAGAAAACATAGTCAGGGTGTATGGTGTAAGCAAGAGTGAGTTACTT
EST: CTGGTGGAGATACAAAGGCTTGGAATAGTTTATTCATGCGACCCGATACT ATTCTAGAAAACATAGTCAGGGTGTATGGTGTAAGCAAGAGTGAGTTACTTEST: gi|116413069|gb|EG455661.1|EG455661
genomic: CTGGTGGAGATACAAAGGCTTGGAATAGTTTATTCATGCGACCCGATACTgtacgttttt ... tgtgttgtagATTCTAGAAAACATAGTCAGGGTGTATGGTGTAAGCAAGAGTGAGTTACTT
EST: CTGGTGGAGATACAAAGGCTTGGAATAGTTTATTCATGCGACCCGATACT ATTCTAGAAAACATAGTCAGGGTGTATGGTGTAAGCAAGAGTGAGTTACTTEST: gi|116413075|gb|EG455667.1|EG455667
genomic: CTGGTGGAGATACAAAGGCTTGGAATAGTTTATTCATGCGACCCGATACTgtacgttttt ... tgtgttgtagATTCTAGAAAACATAGTCAGGGTGTATGGTGTAAGCAAGAGTGAGTTACTT
EST: CTGGTGGAGATACAAAGGCTTGGAATAGTTTATTCATGCGACCCGATACT ATTCTAGAAAACATAGTCAGGGTGTATGGTGTAAGCAAGAGTGAGTTACTTEST: gi|116458754|gb|EG501346.1|EG501346
genomic: CTGGTGGAGATACAAAGGCTTGGAATAGTTTATTCATGCGACCCGATACTgtacgttttt ... tgtgttgtagATTCTAGAAAACATAGTCAGGGTGTATGGTGTAAGCAAGAGTGAGTTACTT
EST: CTGGTGGAGATACAAAGGCTTGGGATAGTTTATTCATGCGACCCGATACT ATTCTAGAAAACATAGTCAGGGTGTATGGTGTAAGCAAGAGTGAGTTACTTEST: gi|116413074|gb|EG455666.1|EG455666
genomic: CTGGTGGAGATACAAAGGCTTGGAATAGTTTATTCATGCGACCCGATACTgtacgttttt ... tgtgttgtagATTCTAGAAAACATAGTCAGGGTGTATGGTGTAAGCAAGAGTGAGTTACTT
EST: CTGGTGGAGATACAAAGGCTTGGAATAGTTTATTCATGCGACCCGATACT ATTCTAGAAAACATAGTCAGGGTGTATGGTGTAAGCAAGAGTGAGTTACTTEST: gi|116458748|gb|EG501340.1|EG501340
genomic: CTGGTGGAGATACAAAGGCTTGGAATAGTTTATTCATGCGACCCGATACTgtacgttttt ... tgtgttgtagATTCTAGAAAACATAGTCAGGGTGTATGGTGTAAGCAAGAGTGAGTTACTT
EST: CTGGTGGAGATACAAAGGCTTGGAATAGTTTATTCATGCGACCCGATACT ATTCTAGAAAACATAGTCAGGGTGTATGGTGTAAGCAAGAGTGAGTTACTTEST: gi|116458745|gb|EG501337.1|EG501337
genomic: CTGGTGGAGATACAAAGGCTTGGAATAGTTTATTCATGCGACCCGATACTgtacgttttt ... tgtgttgtagATTCTAGAAAACATAGTCAGGGTGTATGGTGTAAGCAAGAGTGAGTTACTT
EST: CTGGTGGAGATACAAAGGCTTGGAATAGTTTATTCATGCGACCCGATACT ATTCTAGAAAACATAGTCAGGGTGTATGGTGTAAGCAAGAGTGAGTTACTTEST: gi|116413072|gb|EG455664.1|EG455664
genomic: CTGGTGGAGATACAAAGGCTTGGAATAGTTTATTCATGCGACCCGATACTgtacgttttt ... tgtgttgtagATTCTAGAAAACATAGTCAGGGTGTATGGTGTAAGCAAGAGTGAGTTACTT
EST: CTGGTGGAGATACAAAGGCTTGGAATAGTTTATTCATGCGACCCGATACT ATTCTAGAAAACATAGTCAGGGTGTATGGTGTAAGCAAGAGTGAGTTACTTEST: gi|116413070|gb|EG455662.1|EG455662
genomic: CTGGTGGAGATACAAAGGCTTGGAATAGTTTATTCATGCGACCCGATACTgtacgttttt ... tgtgttgtagATTCTAGAAAACATAGTCAGGGTGTATGGTGTAAGCAAGAGTGAGTTACTT
EST: CTGGTGGAGATACAAAGGCTTGGAATAGTTTATTCATGCGACCCGATACT ATTCTAGAAAACATAGTCAGGGTGTATGGTGTAAGCAAGAGTGAGTTACTT
genomic: CTGGTGGAGATACAAAGGCTTGGAATAGTTTATTCATGCGACCCGATACTgtacgttttt ... tgtgttgtagATTCTAGAAAACATAGTCAGGGTGTATGGTGTAAGCAAGAGTGAGTTACTT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GCCAAAAACATTCAAGCAGAAGAGAGAGGAACAAAGAAAGGCATCTGAAGCTGGTGGAGATACAAAGGCTTGGAATAGTTTATTCATGCGACCCGATACTgtacgtttttcctgtttaaagaatgcatcctttagtgttttttaaatatagcttgcttcatgttttttttcttttcctttttgtgttgtag
- - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - GGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - GTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAT