1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' |
gtactagatcttcttgttcatctcatacacttgttttctgtttatctttctgttattcatcttatacatctctgattgttgtcaataatctcatgcaatagAGAAGAAGAGCTTATGGAACATTTTAGCACATTCGGTAAGATATCAGAAGTCCATCTTGTTCTTGACAAGGAGACAAAAAGGTCCAGGGGAATTGCCTAC
species | Arabidopsis thaliana |
transcript | AT4G19610.1 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: CTGGTCGCCTTTTCGTCCGTAACCTGCCTTACACTGCAAC AGAAGAAGAGCTTATGGAACATTTTAGCACATTCGGTAAGATATCAGAAGTEST: gi|116458749|gb|EG501341.1|EG501341
genomic: CTGGTCGCCTTTTCGTCCGTAACCTGCCTTACACTGCAACgtactagatc ... catgcaatagAGAAGAAGAGCTTATGGAACATTTTAGCACATTCGGTAAGATATCAGAAGT
EST: CTGGTCGCCTTTTCGTCCGTAACCTGCCTTACACTGCAAC AGAAGAAGAGCTTATGGAACATTTTAGCACATTCGGTAAGATATCAGAAGTEST: gi|116413073|gb|EG455665.1|EG455665
genomic: CTGGTCGCCTTTTCGTCCGTAACCTGCCTTACACTGCAACgtactagatc ... catgcaatagAGAAGAAGAGCTTATGGAACATTTTAGCACATTCGGTAAGATATCAGAAGT
EST: CTGGTCGCCTTTTCGTCCGTAACCTGCCTTACACTGCAAC AGAAGAAGAGCTTATGGAACATTTCAGCACATTCGGTAAGATATCAGAAGTEST: gi|116413069|gb|EG455661.1|EG455661
genomic: CTGGTCGCCTTTTCGTCCGTAACCTGCCTTACACTGCAACgtactagatc ... catgcaatagAGAAGAAGAGCTTATGGAACATTTTAGCACATTCGGTAAGATATCAGAAGT
EST: GGTCGCCTTTTCGTCCGTAACCTGCCTTACACTGCAAC AGAAGAAGAGCTTATGGAACATTTTAGCACATTCGGTAAGATATCAGAAGTEST: gi|116413075|gb|EG455667.1|EG455667
genomic: GGTCGCCTTTTCGTCCGTAACCTGCCTTACACTGCAACgtactagatc ... catgcaatagAGAAGAAGAGCTTATGGAACATTTTAGCACATTCGGTAAGATATCAGAAGT
EST: CTGGTCGCCTTTTCGTCCGTAACCTGCCTTACACTGCAAC AGAAGAAGAGCTTATGGAACATTTTAGCACATTCGGTAAGATATCAGAAGTEST: gi|116458754|gb|EG501346.1|EG501346
genomic: CTGGTCGCCTTTTCGTCCGTAACCTGCCTTACACTGCAACgtactagatc ... catgcaatagAGAAGAAGAGCTTATGGAACATTTTAGCACATTCGGTAAGATATCAGAAGT
EST: CTGGTCGCCTTTTCGTCCGTAACCTGCCTTACACTGCAAC AGAAGAAGAGCTTATGGAACATTTTAGCACATTCGGTAAGATATCAGAAGTEST: gi|116458745|gb|EG501337.1|EG501337
genomic: CTGGTCGCCTTTTCGTCCGTAACCTGCCTTACACTGCAACgtactagatc ... catgcaatagAGAAGAAGAGCTTATGGAACATTTTAGCACATTCGGTAAGATATCAGAAGT
EST: CTGGTCGCCTTTTCGTCCGTAACCTGCCTTACACTGCAAC AGAAGAAGAGCTTATGGAACATTTTAGCACATTCGGTAAGATATCAGAAGTEST: gi|116413070|gb|EG455662.1|EG455662
genomic: CTGGTCGCCTTTTCGTCCGTAACCTGCCTTACACTGCAACgtactagatc ... catgcaatagAGAAGAAGAGCTTATGGAACATTTTAGCACATTCGGTAAGATATCAGAAGT
EST: CTGGTCGCCTTTTCGTCCGTAACCTGCCTTACACTGCAAC AGAAGAAGAGCTTATGGAACATTTTAGCACATTCGGTAAGATATCAGAAGT
genomic: CTGGTCGCCTTTTCGTCCGTAACCTGCCTTACACTGCAACgtactagatc ... catgcaatagAGAAGAAGAGCTTATGGAACATTTTAGCACATTCGGTAAGATATCAGAAGT
tttctgttattcatcttatacatctctgattgttgtcaataatctcatgcaatagAGAAGAAGAGCTTATGGAACATTTTAGCACATTCGGTAAGATATCAGAAGTCCATCTTGTTCTTGACAAGGAGACAAAAAGGTCCAGGGGAATTGCCTAC
ctctgat putative branch site (score: 4)
ttattcatcttata TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtactagatcttcttgttcatctcatacacttgttttctgtttatctttctgttattcatcttatacatctctgattgttgtcaataatctcatgcaatagAGAAGAAGAGCTTATGGAACATTTTAGCACATTCGGTAAGATATCAGAAGTCCATCTTGTTCTTGACAAGGAGACAAAAAGGTCCAGGGGAATTGCCTAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA