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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TCGGTAAGATATCAGAAGTCCATCTTGTTCTTGACAAGGAGACAAAAAGGTCCAGGGGAATTGCCTACATCCTTTACCTGATTCCGGAATGTGCGGCAAGgtattatttatgtcaaaaagtagttttattactgctggtaaccccttgaggtctaagtgcatgcttttcaagaagtagccttgtgttgagctctagctgttagttcaggttttaaaacatttgatggtgatgcag

Basic information

species Arabidopsis thaliana
transcript AT4G19610.1
intron # 5
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|116458756|gb|EG501348.1|EG501348
EST:     TCCAGGGGAATTGCCTACATCCTTTACCTGATTCCGGAATGTGCGGCAAG                         GGCAATGGAGGAATTAGATAACTCAAGTTTTCAGGGCCGGTTGTTGCATAT
genomic: TCCAGGGGAATTGCCTACATCCTTTACCTGATTCCGGAATGTGCGGCAAGgtattattta ... ggtgatgcagGGCAATGGAGGAATTAGATAACTCAAGTTTTCAGGGCCGGTTGTTGCATAT
EST: gi|116458749|gb|EG501341.1|EG501341
EST:     TCCAGGGGAATTGCCTACATCCTTTACCTGATTCCGGAATGTGCGGCAAG                         GGCAATGGAGGAATTAGATAACTCAAGTTTTCAGGGCCGGTTGTTGCATAT
genomic: TCCAGGGGAATTGCCTACATCCTTTACCTGATTCCGGAATGTGCGGCAAGgtattattta ... ggtgatgcagGGCAATGGAGGAATTAGATAACTCAAGTTTTCAGGGCCGGTTGTTGCATAT
EST: gi|116413073|gb|EG455665.1|EG455665
EST:     TCCAGGGGAATTGCCTACATCCTTTACCTGATTCCGGAATGTGCGGCAAG                         GGCAATGGAGGAATTAGATAACTCAAGTTTTCAGGGCCGGTTGTTGCATAT
genomic: TCCAGGGGAATTGCCTACATCCTTTACCTGATTCCGGAATGTGCGGCAAGgtattattta ... ggtgatgcagGGCAATGGAGGAATTAGATAACTCAAGTTTTCAGGGCCGGTTGTTGCATAT
EST: gi|116413069|gb|EG455661.1|EG455661
EST:     TCCAGGGGAATTGCCTACATCCTTTACCTGATTCCGGAATGTGCGGCAAG                         GGCAATGGAGGAATTAGATAACTCAAGTTTTCAGGGCCGGTTGTTGCATAT
genomic: TCCAGGGGAATTGCCTACATCCTTTACCTGATTCCGGAATGTGCGGCAAGgtattattta ... ggtgatgcagGGCAATGGAGGAATTAGATAACTCAAGTTTTCAGGGCCGGTTGTTGCATAT
EST: gi|116413075|gb|EG455667.1|EG455667
EST:     TCCAGGGGAATTGCCTACATCCTTTACCTGATTCCGGAATGTGCGGCAAG                         GGCAATGGAGGAATTAGATAACTCAAGTTTTCAGGGCCGGTTGTTGCATAT
genomic: TCCAGGGGAATTGCCTACATCCTTTACCTGATTCCGGAATGTGCGGCAAGgtattattta ... ggtgatgcagGGCAATGGAGGAATTAGATAACTCAAGTTTTCAGGGCCGGTTGTTGCATAT
EST: gi|116458754|gb|EG501346.1|EG501346
EST:     TCCAGGGGAATTGCCTACATCCTTTACCTGATTCCGGAATGTGCGGCAAG                         GGCAATGGAGGAATTAGATAACTCAAGTTTTCAGGGCCGGTTGTTGCATAT
genomic: TCCAGGGGAATTGCCTACATCCTTTACCTGATTCCGGAATGTGCGGCAAGgtattattta ... ggtgatgcagGGCAATGGAGGAATTAGATAACTCAAGTTTTCAGGGCCGGTTGTTGCATAT
EST: gi|116458745|gb|EG501337.1|EG501337
EST:     TCCAGGGGAATTGCCTACATCCTTTACCTGATTCCGGAATGTGCGGCAAG                         GGCAATGGAGGAATTAGATAACTCAAGTTTTCAGGGCCGGTTGTTGCATAT
genomic: TCCAGGGGAATTGCCTACATCCTTTACCTGATTCCGGAATGTGCGGCAAGgtattattta ... ggtgatgcagGGCAATGGAGGAATTAGATAACTCAAGTTTTCAGGGCCGGTTGTTGCATAT
EST: gi|116413070|gb|EG455662.1|EG455662
EST:     TCCAGGGGAATTGCCTACATCCTTTACCTGATTCCGGAATGTGCGGCAAG                         GGCAATGGAGGAATTAGATAACTCAAGTTTTCAGGGCCGGTTGTTGCATAT
genomic: TCCAGGGGAATTGCCTACATCCTTTACCTGATTCCGGAATGTGCGGCAAGgtattattta ... ggtgatgcagGGCAATGGAGGAATTAGATAACTCAAGTTTTCAGGGCCGGTTGTTGCATAT