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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCAATATGCTGGTTATGCTTTTGTTGAATTTGTGACAAAGCAAGAAGCCTTAAACGCTAAAAAAGCATTAGCCAGCACCCATTTCTACGGACGCCATTTGgtaagtcttatgttgtgcgcttgtctctcccaagccagatatcctttatttatccattctctttgactgtccatttcag

Basic information

species Arabidopsis thaliana
transcript AT4G19610.1
intron # 14
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|116458755|gb|EG501347.1|EG501347
EST:     TAAACGCTAAAAAAGCATTAGCCAGCACCCATTTTTACGGACGCCATTTG                         GTGCTGGAGTGGGCTAACGATGACAATAGCATGGAAGCGATCAGGAAGCGT
genomic: TAAACGCTAAAAAAGCATTAGCCAGCACCCATTTCTACGGACGCCATTTGgtaagtctta ... tccatttcagGTGCTCGAGTGGGCTAACGATGACAATAGCATGGAAGCGATCAGGAAGCGT
EST: gi|116413068|gb|EG455660.1|EG455660
EST:     TAAACGCTAAAAAAGCATTAGCCAGCACCCATTTCTACGGACGCCATTTG                         GTGCTCGAGTGGGCTAACGATGACAATAGCATGGAAGCGATCAGGAAGCGT
genomic: TAAACGCTAAAAAAGCATTAGCCAGCACCCATTTCTACGGACGCCATTTGgtaagtctta ... tccatttcagGTGCTCGAGTGGGCTAACGATGACAATAGCATGGAAGCGATCAGGAAGCGT
EST: gi|116458744|gb|EG501336.1|EG501336
EST:     TAAACGCTAAAAAAGCATTAGCCAGCACCCATTTTTACGGACGCCATTTG                         GTGCTCGAGTGGGCTAACGATGACAATAGCATGGAAGCGATCAGGAAGCGT
genomic: TAAACGCTAAAAAAGCATTAGCCAGCACCCATTTCTACGGACGCCATTTGgtaagtctta ... tccatttcagGTGCTCGAGTGGGCTAACGATGACAATAGCATGGAAGCGATCAGGAAGCGT
EST: gi|116413078|gb|EG455670.1|EG455670
EST:     TAAACGCTAAAAAAGCATTAGCCAGCACCCATTTCTACGGACGCCATTTG                         GTGCTCGAGTGGGCTAACGATGACAATAGCATGGAAGCGATCAGGAAGCGT
genomic: TAAACGCTAAAAAAGCATTAGCCAGCACCCATTTCTACGGACGCCATTTGgtaagtctta ... tccatttcagGTGCTCGAGTGGGCTAACGATGACAATAGCATGGAAGCGATCAGGAAGCGT
EST: gi|116458753|gb|EG501345.1|EG501345
EST:     TAAACGCTAAAAAAGCATTAGCCAGCACCCATTTTTACGGACGCCATTTG                         GTGCTCGAGTGGGCTAACGATGACAATAGCATGGAAGCGATCAGGAAGCGT
genomic: TAAACGCTAAAAAAGCATTAGCCAGCACCCATTTCTACGGACGCCATTTGgtaagtctta ... tccatttcagGTGCTCGAGTGGGCTAACGATGACAATAGCATGGAAGCGATCAGGAAGCGT