1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' |
AATAAAGCATAAAAAGAATGAGAAGTATCTTTCAAGCGGTTATGGTTTTGTAGAATTCGACTCTGTAGAGACAGCCACCAGTGTCTACAGAGATCTACAGgtatataatagttaagtctctttgcatatgtatattttaaagttgattggacttgatggagtagagtggcactttcttctttggcag
species | Arabidopsis thaliana |
transcript | AT4G19610.1 |
intron # | 12 |
splice site | 5' |
intron type | U2 |
EST: TAGAATTCGACTCTGTAGAGACAGCCACCAGTGTTTACAGAGATTTACAG GGGACTGTTCTGGATGGGCATGCTTTGATCTTGAGATTCTGTGAAAACAAGEST: gi|116413068|gb|EG455660.1|EG455660
genomic: TAGAATTCGACTCTGTAGAGACAGCCACCAGTGTCTACAGAGATCTACAGgtatataata ... tctttggcagGGGACTGTTCTGGATGGGCATGCTTTGATCTTGAGATTCTGTGAAAACAAG
EST: TAGAATTCGACTCTGTAGAGACAGCCACCAGTGTCTACAGAGATCTACAG GGGACTGTTCTGGATGGGCATGCTTTGATCTTGAGATTCTGTGAAAACAAGEST: gi|116458744|gb|EG501336.1|EG501336
genomic: TAGAATTCGACTCTGTAGAGACAGCCACCAGTGTCTACAGAGATCTACAGgtatataata ... tctttggcagGGGACTGTTCTGGATGGGCATGCTTTGATCTTGAGATTCTGTGAAAACAAG
EST: TAGAATTCGACTCTGTAGAGACAGCCACCAGTGTCTACAGAGATCTACAG GGGACTGTTCTGGATGGGCATGCTTTGATCTTGAGATTCTGTGAAAACAAGEST: gi|116413078|gb|EG455670.1|EG455670
genomic: TAGAATTCGACTCTGTAGAGACAGCCACCAGTGTCTACAGAGATCTACAGgtatataata ... tctttggcagGGGACTGTTCTGGATGGGCATGCTTTGATCTTGAGATTCTGTGAAAACAAG
EST: TAGAATTCGACTCTGTAGAGACAGCCACCAGTGTTTACAGAGATCTACAG GGGACTGTTCTGGATGGGCATGCTTTGATCTTGAGATTCTGTGAAAACAAGEST: gi|116458753|gb|EG501345.1|EG501345
genomic: TAGAATTCGACTCTGTAGAGACAGCCACCAGTGTCTACAGAGATCTACAGgtatataata ... tctttggcagGGGACTGTTCTGGATGGGCATGCTTTGATCTTGAGATTCTGTGAAAACAAG
EST: TGTCTACAGAGATCTACAG GGGACTGTTCTGGATGGGCATGCTTTGATCTTGAGATTCTGTGAAAACAAG
genomic: TGTCTACAGAGATCTACAGgtatataata ... tctttggcagGGGACTGTTCTGGATGGGCATGCTTTGATCTTGAGATTCTGTGAAAACAAG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AATAAAGCATAAAAAGAATGAGAAGTATCTTTCAAGCGGTTATGGTTTTGTAGAATTCGACTCTGTAGAGACAGCCACCAGTGTCTACAGAGATCTACAGgtatataatagttaagtctctttgcatatgtatattttaaagttgattggacttgatggagtagagtggcactttcttctttggcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATC