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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatataatagttaagtctctttgcatatgtatattttaaagttgattggacttgatggagtagagtggcactttcttctttggcagGGGACTGTTCTGGATGGGCATGCTTTGATCTTGAGATTCTGTGAAAACAAGCGGAGTGACAAGGTTGGAAAAGATTCAAACAAGGACAAACCTTGTACAA

Basic information

species Arabidopsis thaliana
transcript AT4G19610.1
intron # 12
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|116458755|gb|EG501347.1|EG501347
EST:     TAGAATTCGACTCTGTAGAGACAGCCACCAGTGTTTACAGAGATTTACAG                         GGGACTGTTCTGGATGGGCATGCTTTGATCTTGAGATTCTGTGAAAACAAG
genomic: TAGAATTCGACTCTGTAGAGACAGCCACCAGTGTCTACAGAGATCTACAGgtatataata ... tctttggcagGGGACTGTTCTGGATGGGCATGCTTTGATCTTGAGATTCTGTGAAAACAAG
EST: gi|116413068|gb|EG455660.1|EG455660
EST:     TAGAATTCGACTCTGTAGAGACAGCCACCAGTGTCTACAGAGATCTACAG                         GGGACTGTTCTGGATGGGCATGCTTTGATCTTGAGATTCTGTGAAAACAAG
genomic: TAGAATTCGACTCTGTAGAGACAGCCACCAGTGTCTACAGAGATCTACAGgtatataata ... tctttggcagGGGACTGTTCTGGATGGGCATGCTTTGATCTTGAGATTCTGTGAAAACAAG
EST: gi|116458744|gb|EG501336.1|EG501336
EST:     TAGAATTCGACTCTGTAGAGACAGCCACCAGTGTCTACAGAGATCTACAG                         GGGACTGTTCTGGATGGGCATGCTTTGATCTTGAGATTCTGTGAAAACAAG
genomic: TAGAATTCGACTCTGTAGAGACAGCCACCAGTGTCTACAGAGATCTACAGgtatataata ... tctttggcagGGGACTGTTCTGGATGGGCATGCTTTGATCTTGAGATTCTGTGAAAACAAG
EST: gi|116413078|gb|EG455670.1|EG455670
EST:     TAGAATTCGACTCTGTAGAGACAGCCACCAGTGTTTACAGAGATCTACAG                         GGGACTGTTCTGGATGGGCATGCTTTGATCTTGAGATTCTGTGAAAACAAG
genomic: TAGAATTCGACTCTGTAGAGACAGCCACCAGTGTCTACAGAGATCTACAGgtatataata ... tctttggcagGGGACTGTTCTGGATGGGCATGCTTTGATCTTGAGATTCTGTGAAAACAAG
EST: gi|116458753|gb|EG501345.1|EG501345
EST:     TGTCTACAGAGATCTACAG                         GGGACTGTTCTGGATGGGCATGCTTTGATCTTGAGATTCTGTGAAAACAAG
genomic: TGTCTACAGAGATCTACAGgtatataata ... tctttggcagGGGACTGTTCTGGATGGGCATGCTTTGATCTTGAGATTCTGTGAAAACAAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tattttaaagttgattggacttgatggagtagagtggcactttcttctttggcagGGGACTGTTCTGGATGGGCATGCTTTGATCTTGAGATTCTGTGAAAACAAGCGGAGTGACAAGGTTGGAAAAGATTCAAACAAGGACAAACCTTGTACAA
                  acttgat  putative branch site (score: 5)
                                     cactttcttcttt  putative PPT
     taaagtt  TA-rich tract