1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' |
TCTTCCTGACACCAATGAAGAGAGAAGTGACATTGAAGAAAATGGCGTGAGAAGAGTCAACTTGGAGCAGCAGGTTGAAATCGATCCAGATGTAACTGAGgtatgtccagttatggtagctgtgaacgttttgaaatcatatgttttttttctgtttgagtggatactagctatcagaactgaaaggtagttgagaaaat...
species | Arabidopsis thaliana |
transcript | AT4G19610.1 |
intron # | 10 |
splice site | 5' |
intron type | U2 |
EST: GAAGAGTCAACTTGGAGCAGCAGGTTGAAATCGATCCAGATGTAACTGAG TCAAATGTCCTTAATGTTAAGAATTTGAGCTTCAAGACAACTGATGAGGGTEST: gi|116458754|gb|EG501346.1|EG501346
genomic: GAAGAGTCAACTTGGAGCAGCAGGTTGAAATCGATCCAGATGTAACTGAGgtatgtccag ... tatatttcagTCAAATGTCCTTAATGTTAAGAATCTGAGCTTCAAGACAACTGATGAGGGT
EST: GAAGAGTCAACTTGGAGCAGCAGGTTGAAATCGATCCAGATGTAACTGAG TCAAATGTCCTTAATEST: gi|116413074|gb|EG455666.1|EG455666
genomic: GAAGAGTCAACTTGGAGCAGCAGGTTGAAATCGATCCAGATGTAACTGAGgtatgtccag ... tatatttcagTCAAATGTCCTTAAT
EST: GAAGAGTCAACTTGGAGCAGCAGGTTGAAATCGATCCAGATGTAACTGAG TCAAATGTCCTTAATGTTAAGAATTTGAGCTTCAAGACAACTGATGAGGGTEST: gi|116458744|gb|EG501336.1|EG501336
genomic: GAAGAGTCAACTTGGAGCAGCAGGTTGAAATCGATCCAGATGTAACTGAGgtatgtccag ... tatatttcagTCAAATGTCCTTAATGTTAAGAATCTGAGCTTCAAGACAACTGATGAGGGT
EST: GAAGAGTCAACTTGGAGCAGCAGGTTGAAATCGATCCAGATGTAACTGAG TCAAATGTCCTTAATGTTAAGAATCTGAGCTTCAAGACAACTGATGAGGGTEST: gi|116458748|gb|EG501340.1|EG501340
genomic: GAAGAGTCAACTTGGAGCAGCAGGTTGAAATCGATCCAGATGTAACTGAGgtatgtccag ... tatatttcagTCAAATGTCCTTAATGTTAAGAATCTGAGCTTCAAGACAACTGATGAGGGT
EST: GAAGAGTCAACTTGGAGCAGCAGGTTGAAATCGATCCAGATGTAACTGAG TCAAATGTCCTTAATGTTAAGAATTTGAGCTTCAAGACAACTGATGAGGGTEST: gi|116413072|gb|EG455664.1|EG455664
genomic: GAAGAGTCAACTTGGAGCAGCAGGTTGAAATCGATCCAGATGTAACTGAGgtatgtccag ... tatatttcagTCAAATGTCCTTAATGTTAAGAATCTGAGCTTCAAGACAACTGATGAGGGT
EST: GAAGAGTCAACTTGGAGCAGCAGGTTGAAATCGATCCAGATGTAACTGAG TCAAATGTCCTTAATGTTAAGAATCTGAGCTTCAAGACAACTGATGAGGGT
genomic: GAAGAGTCAACTTGGAGCAGCAGGTTGAAATCGATCCAGATGTAACTGAGgtatgtccag ... tatatttcagTCAAATGTCCTTAATGTTAAGAATCTGAGCTTCAAGACAACTGATGAGGGT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TCTTCCTGACACCAATGAAGAGAGAAGTGACATTGAAGAAAATGGCGTGAGAAGAGTCAACTTGGAGCAGCAGGTTGAAATCGATCCAGATGTAACTGAGgtatgtccagttatggtagctgtgaacgttttgaaatcatatgttttttttctgtttgagtggatactagctatcagaactgaaaggtagttgagaaaat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aactgaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgagaaaa