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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TAGAAGGTGATGGCAAGGTGGCTCAAGAATCGAAAGCTGTCAGTGATGATGTTCTTGACACTGGTCGCCTTTTCGTCCGTAACCTGCCTTACACTGCAACgtactagatcttcttgttcatctcatacacttgttttctgtttatctttctgttattcatcttatacatctctgattgttgtcaataatctcatgcaatag

Basic information

species Arabidopsis thaliana
transcript AT4G19610.1
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT4G19610.1 (Arabidopsis thaliana), 5'ss of exon 4
lower sequence: Vv01s0011g01060.t01 (Vitis vinifera), 5'ss of exon 4
TAGAAGGTGATGGCAAGGTGGCT----CAAGAATCGAAAGCTGTCAGTGATGATGTTCTTGACACTGGTCGCCTTTTCGTCCGTAACCTGCCTTACACTGCAACgtactagatctt-cttgttcatctcatacacttgttttctgtttatctttctgttattcatctta-tacatctctgattgt-tgtca-ataatctcatgca-atag----------------------------------------------------------------------------------
 | | | ||    || ||   |       |   || |||| ||   |  | ||||||||||| |||||||| ||||| |||||||| || || || |||||||||||||    ||| ||   || |  | |     | |||||  |||   |||  | | |  |    | || || | || |    ||| | ||||  ||||     | |                                                                                  
-AAAGGATGGACTCAGGGAACCCATTGTTAAGTTCAAAAGATG---GGAAAGATGTTCTTGAGACTGGTCGGCTTTTTGTCCGTAATCTTCCATATACTGCAACgtactgatccttgctccctctttgcttttttcttttttcctttttctttttgggtgtatactgcaatatatttttggtaaagtgtaagataaattcatttgtgttgccatttttttattctaattggatttatgtttttcttataacttctgagtcctgattccttaaatgttcttgatgttattcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|116458756|gb|EG501348.1|EG501348
EST:     CTGGTCGCCTTTTCGTCCGTAACCTGCCTTACACTGCAAC                         AGAAGAAGAGCTTATGGAACATTTTAGCACATTCGGTAAGATATCAGAAGT
genomic: CTGGTCGCCTTTTCGTCCGTAACCTGCCTTACACTGCAACgtactagatc ... catgcaatagAGAAGAAGAGCTTATGGAACATTTTAGCACATTCGGTAAGATATCAGAAGT
EST: gi|116458749|gb|EG501341.1|EG501341
EST:     CTGGTCGCCTTTTCGTCCGTAACCTGCCTTACACTGCAAC                         AGAAGAAGAGCTTATGGAACATTTTAGCACATTCGGTAAGATATCAGAAGT
genomic: CTGGTCGCCTTTTCGTCCGTAACCTGCCTTACACTGCAACgtactagatc ... catgcaatagAGAAGAAGAGCTTATGGAACATTTTAGCACATTCGGTAAGATATCAGAAGT
EST: gi|116413073|gb|EG455665.1|EG455665
EST:     CTGGTCGCCTTTTCGTCCGTAACCTGCCTTACACTGCAAC                         AGAAGAAGAGCTTATGGAACATTTCAGCACATTCGGTAAGATATCAGAAGT
genomic: CTGGTCGCCTTTTCGTCCGTAACCTGCCTTACACTGCAACgtactagatc ... catgcaatagAGAAGAAGAGCTTATGGAACATTTTAGCACATTCGGTAAGATATCAGAAGT
EST: gi|116413069|gb|EG455661.1|EG455661
EST:     GGTCGCCTTTTCGTCCGTAACCTGCCTTACACTGCAAC                         AGAAGAAGAGCTTATGGAACATTTTAGCACATTCGGTAAGATATCAGAAGT
genomic: GGTCGCCTTTTCGTCCGTAACCTGCCTTACACTGCAACgtactagatc ... catgcaatagAGAAGAAGAGCTTATGGAACATTTTAGCACATTCGGTAAGATATCAGAAGT
EST: gi|116413075|gb|EG455667.1|EG455667
EST:     CTGGTCGCCTTTTCGTCCGTAACCTGCCTTACACTGCAAC                         AGAAGAAGAGCTTATGGAACATTTTAGCACATTCGGTAAGATATCAGAAGT
genomic: CTGGTCGCCTTTTCGTCCGTAACCTGCCTTACACTGCAACgtactagatc ... catgcaatagAGAAGAAGAGCTTATGGAACATTTTAGCACATTCGGTAAGATATCAGAAGT
EST: gi|116458754|gb|EG501346.1|EG501346
EST:     CTGGTCGCCTTTTCGTCCGTAACCTGCCTTACACTGCAAC                         AGAAGAAGAGCTTATGGAACATTTTAGCACATTCGGTAAGATATCAGAAGT
genomic: CTGGTCGCCTTTTCGTCCGTAACCTGCCTTACACTGCAACgtactagatc ... catgcaatagAGAAGAAGAGCTTATGGAACATTTTAGCACATTCGGTAAGATATCAGAAGT
EST: gi|116458745|gb|EG501337.1|EG501337
EST:     CTGGTCGCCTTTTCGTCCGTAACCTGCCTTACACTGCAAC                         AGAAGAAGAGCTTATGGAACATTTTAGCACATTCGGTAAGATATCAGAAGT
genomic: CTGGTCGCCTTTTCGTCCGTAACCTGCCTTACACTGCAACgtactagatc ... catgcaatagAGAAGAAGAGCTTATGGAACATTTTAGCACATTCGGTAAGATATCAGAAGT
EST: gi|116413070|gb|EG455662.1|EG455662
EST:     CTGGTCGCCTTTTCGTCCGTAACCTGCCTTACACTGCAAC                         AGAAGAAGAGCTTATGGAACATTTTAGCACATTCGGTAAGATATCAGAAGT
genomic: CTGGTCGCCTTTTCGTCCGTAACCTGCCTTACACTGCAACgtactagatc ... catgcaatagAGAAGAAGAGCTTATGGAACATTTTAGCACATTCGGTAAGATATCAGAAGT