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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTCAAACAAGGACAAACCTTGTACAAAGTTACATGTGAAAAATATAGCTTTTGAGGCAACCAAGAGAGAACTAAGACAGCTATTCAGTCCATTTGGACAGgtatgcacttatctttaggatagagtgatgttatgggcacagcttattagttctatgttacaaaccatgaacacatactgttattctcgtatactggtcttatgtgtgtaaaaattctttttgttagagaaactacatgggtatgaaacatctgacaacattcctgttgtttatgcag

Basic information

species Arabidopsis thaliana
transcript AT4G19610.1
intron # 13
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|116458755|gb|EG501347.1|EG501347
EST:     TTGAGGCAACCAAGAGAGAATTAAGACAGCTATTCAGTCCATTTGGACAG                         ATCAAGAGTATGAGGCTTCCAAAGAAGAATATCGGGCAATATGCTGGTTAT
genomic: TTGAGGCAACCAAGAGAGAACTAAGACAGCTATTCAGTCCATTTGGACAGgtatgcactt ... gtttatgcagATCAAGAGTATGAGGCTTCCAAAGAAGAATATCGGGCAATATGCTGGTTAT
EST: gi|116413068|gb|EG455660.1|EG455660
EST:     TTGAGGCAACCAAGAGAGAACTAAGACAGCTATTCAGTCCATTTGGACAG                         ATCAAGAGTATGAGGCTTCCAAAGAAGAATATCGGGCAATATGCTGGTTAT
genomic: TTGAGGCAACCAAGAGAGAACTAAGACAGCTATTCAGTCCATTTGGACAGgtatgcactt ... gtttatgcagATCAAGAGTATGAGGCTTCCAAAGAAGAATATCGGGCAATATGCTGGTTAT
EST: gi|116458744|gb|EG501336.1|EG501336
EST:     TTGAGGCAACCAAGAGAGAACTAAGACAGCTATTCAGTCCATTTGGACAG                         ATCAAGAGTATGAGGCTTCCAAAGAAGAATATCGGGCAATATGCTGGTTAT
genomic: TTGAGGCAACCAAGAGAGAACTAAGACAGCTATTCAGTCCATTTGGACAGgtatgcactt ... gtttatgcagATCAAGAGTATGAGGCTTCCAAAGAAGAATATCGGGCAATATGCTGGTTAT
EST: gi|116413078|gb|EG455670.1|EG455670
EST:     TTGAGGCAACCAAGAGAGAACTAAGACAGCTATTCAGTCCATTTGGACAG                         ATCAAGAGTATGAGGCTTCCAAAGAAGAATATCGGGCAATATGCTGGTTAT
genomic: TTGAGGCAACCAAGAGAGAACTAAGACAGCTATTCAGTCCATTTGGACAGgtatgcactt ... gtttatgcagATCAAGAGTATGAGGCTTCCAAAGAAGAATATCGGGCAATATGCTGGTTAT
EST: gi|116458753|gb|EG501345.1|EG501345
EST:     TTGAGGCAACCAAGAGAGAACTAAGACAGCTATTCAGTCCATTTGGACAG                         ATCAAGAGTATGAGGCTTCCAAAGAAGAATATCGGGCAATATGCTGGTTAT
genomic: TTGAGGCAACCAAGAGAGAACTAAGACAGCTATTCAGTCCATTTGGACAGgtatgcactt ... gtttatgcagATCAAGAGTATGAGGCTTCCAAAGAAGAATATCGGGCAATATGCTGGTTAT

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
TTCAAACAAGGACAAACCTTGTACAAAGTTACATGTGAAAAATATAGCTTTTGAGGCAACCAAGAGAGAACTAAGACAGCTATTCAGTCCATTTGGACAGgtatgcacttatctttaggatagagtgatgttatgggcacagcttattagttctatgttacaaaccatgaacacatactgttattctcgtatactggtcttatgtgtgtaaaaattctttttgttagagaaactacatgggtatgaaacatctgacaacattcctgttgtttatgcag

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAGAGA