1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' |
AACAAAAACTCATCCTTTTCTTCTCTTATTAACCATAATTTCGGATTCCCTTTCTAAGTATACAGCTTTCCCAGAACGAGCTCTTGCAAAGCCAAAGAATgtaagtatttgtttctttagggttttagcgaattcaatcttagtaagtcatcttcttcttttttcgacctttgtataattgcag
species | Arabidopsis thaliana |
transcript | AT4G19610.1 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: TTTCTAAGTATACAGCTTTCCCAGAACGAGCTCTTGCAAAGCCAAAGAAT GTCGAGGATTTGTGTTAAGAATTTGCCAAAACATGTGAAAGAGGATCAACTEST: gi|116484814|gb|EG527406.1|EG527406
genomic: TTTCTAAGTATACAGCTTTCCCAGAACGAGCTCTTGCAAAGCCAAAGAATgtaagtattt ... ataattgcagGTCGAGGATTTGTGTTAAGAATTTGCCAAAACATGTGAAAGAGGATCAACT
EST: TTTCTAAGTATACAGCTTTCCCAGAACGAGCTCTTGCAAAGCCAAAGAAT GTCGAGGATTTGTGTTAAGAATTTGCCAAAACATGTGAAAGAGGATCAACTEST: gi|116484673|gb|EG527265.1|EG527265
genomic: TTTCTAAGTATACAGCTTTCCCAGAACGAGCTCTTGCAAAGCCAAAGAATgtaagtattt ... ataattgcagGTCGAGGATTTGTGTTAAGAATTTGCCAAAACATGTGAAAGAGGATCAACT
EST: TTTCTAAGTATACAACTTTCCCAGAACGAGCTCTTGCAAAGCCAAAGAAT GTCGAGGATTTGTGTTAAGAATTTGCCAAAACATGTGAAAGAGGATCAACTEST: gi|116484669|gb|EG527261.1|EG527261
genomic: TTTCTAAGTATACAGCTTTCCCAGAACGAGCTCTTGCAAAGCCAAAGAATgtaagtattt ... ataattgcagGTCGAGGATTTGTGTTAAGAATTTGCCAAAACATGTGAAAGAGGATCAACT
EST: TTTCTAAGTATACAGCTTTCCCAGAACGAGCTCTTGCAAAGCCAAAGAAT GTCGAGGATTTGTGTTAAGAATTTGCCAAAACATGTGAAAGAGGATCAACT
genomic: TTTCTAAGTATACAGCTTTCCCAGAACGAGCTCTTGCAAAGCCAAAGAATgtaagtattt ... ataattgcagGTCGAGGATTTGTGTTAAGAATTTGCCAAAACATGTGAAAGAGGATCAACT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AACAAAAACTCATCCTTTTCTTCTCTTATTAACCATAATTTCGGATTCCCTTTCTAAGTATACAGCTTTCCCAGAACGAGCTCTTGCAAAGCCAAAGAATgtaagtatttgtttctttagggttttagcgaattcaatcttagtaagtcatcttcttcttttttcgacctttgtataattgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA