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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTCACTGTGTCCAAGGATGGATCTCTTCAAGTGTGGAAGACACGAGTAATAATTAATCCCAATAGGCCTTCGACACAAACAAACTTCTTTGAGCCTGCTGgtaagcctgatatctcttatagagaaaatatattttcctccccgacttaggaataattcccatggtttggtttggagactttgattacgcattgtagcactatccttttttttttttctttgcag

Basic information

species Arabidopsis thaliana
transcript AT3G50590.1
intron # 8
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT3G50590.1 (Arabidopsis thaliana), 5'ss of exon 8
lower sequence: GRMZM2G150772_T01 (Zea mays), 5'ss of exon 5
GTCACTGTGTCCAAGGATGGATCTCTTCAAGTGTGGAAGACACGAGTAATAATTAATCCCAATAGGCCTTCGACACAAACAAACTTCTTTGAGCCTGCTGgtaagcctgatatct----cttatagagaaaatatatt-ttcctccccgacttaggaata-------attcccatggtttggtttggagactttga--ttacgcattgtagcactatccttttttttttttctttgcag-------------------------------------
|| ||| | || ||||||||| | || |||||||||||||||||||| ||||| || || || || |   | |   ||||  | |||||||||| ||| ||| |   | ||   |     |  | ||||||||  |   || ||    | |||||  ||         | | |      ||   |    ||||| |  ||||   |    |     |   |  ||| |||| |||| |                                      
GTTACTATTTCAAAGGATGGAGCACTCCAAGTGTGGAAGACACGAGTTATAATAAACCCTAACAGACAACCAATGGAAACTCATTTCTTTGAGCGTGCAGgttatttttattcttacaattctttgagaaaattgagaatttctttaggccttagctatttcctcctgtcctctcaagctgcccttcttacttttaagttacatttcagggtttatttactcctttattttgtttgaaaatgatttctgcattaattttgcttgttaacattgcag

upper sequence: AT3G50590.1 (Arabidopsis thaliana), 5'ss of exon 8
lower sequence: Vv00s0379g00020.t01 (Vitis vinifera), 5'ss of exon 6
GTCACTGTGTCCAAGGATGGATCTCTTCAAGTGTGGAAGACACGAGTAATAATTAATCCCAATAGGCCTTCGACACAAACAAACTTCTTTGAGCCTGCTGgtaagcctgatatctcttatagagaaaatatattttcctccccgacttaggaataattcccatggtttgg----tttggagac-----tttgattacgcattgtagcactatccttttttttttttctttgcag--------------
|||||| | |||||||||||| |||||||||||||||| |||||||| ||  ||||||| ||||| ||| | |  ||| |||| |||||||||||||||||| ||| |||| |   |        |    |  |  | |  |   |  | |||| |||| ||||   ||     | | |  ||      |  ||| | | ||||   |  | |  |  ||    |  ||  ||               
GTCACTCTTTCCAAGGATGGAACTCTTCAAGTGTGGAAAACACGAGTGATGCTTAATCCAAATAGACCTCCTATGCAAGCAAATTTCTTTGAGCCTGCTGgttagc-tgatttgctt-------gactctttctgcctttgctatcaaaagaatgattctcatgtggtgaaatttctaggtacatatgctgaatttcactttgtgaaaacaactgtggttcacatatttctcatgtttcattctgcag