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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGCATTCTTGGCTCTGGCTAAGGATCAATCGCGTGGTGCAGATATCAAAGCTCAAGCCACAATCTGTGCTCAGTACAAGATAGCTGTAACTCTCCTTCGGgtaactaactctcgtcgatctcccctgtaatgagtttagattctgctcaaacgatgagaccatcttatcaatgctttttttctcctctctcccatttgcag

Basic information

species Arabidopsis thaliana
transcript AT3G50590.1
intron # 25
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT3G50590.1 (Arabidopsis thaliana), 5'ss of exon 25
lower sequence: GLYMA05G10590.1 (Glycine max), 5'ss of exon 24
AGCATTCTTGGCTCTGGCTAAGGATCAATCGCGTGGTGCAGATATCAAAGCTCAAGCCACAATCTGTGCTCAGTACAAGATAGCTGTAACTCTCCTTCGGgtaac-taactctcgt-cgatctcccctgtaatgagtttagattctgctcaaacgatgagaccatctta----tcaatgctttttttctcctctctcccatttgcag
||| ||  | ||  |||||||||| ||||| |||||    ||||| ||||||||||| |||||||||||||| |||||||| || || ||||| |||||||||   ||||| |  | | || |      |||  ||  | ||      ||||   | |  ||  | |||    | ||| |  ||| ||   | |  ||||       
AGCTTTTCTTGCCTTGGCTAAGGAACAATCTCGTGGAATTGATATAAAAGCTCAAGCAACAATCTGTGCTCAATACAAGATTGCAGTCACTCTTCTTCGGgtactataactattattcaattttaagcataagtagaatggacatctttcaagaaaagtaactgtgttaagctttaattcagtttgtcaattttg-cccac------

upper sequence: AT3G50590.1 (Arabidopsis thaliana), 5'ss of exon 25
lower sequence: GLYMA17G20310.1 (Glycine max), 5'ss of exon 25
AGCATTCTTGGCTCTGGCTAAGGATCAATCGCGTGGTGCAGATATCAAAGCTCAAGCCACAATCTGTGCTCAGTACAAGATAGCTGTAACTCTCCTTCGGgtaac-taactctcgt-cgatctcccctgtaatgagtttagattctgctcaaacgatgagaccatcttatcaatgctttttttctcctctctcccatttgcag--
||| ||  | ||  |||||||||| ||||| ||||     ||||| ||||||||||| |||||||||||||| |||||||| || || ||||| |||| ||||   ||||| |  | | || |      |||  ||  | ||       ||||  | |  ||  | |||       | ||  |    |   ||  ||||||    
AGCTTTTCTTGCCTTGGCTAAGGAACAATCTCGTGAAATTGATATAAAAGCTCAAGCAACAATCTGTGCTCAATACAAGATTGCAGTCACTCTTCTTCAGgtactataactattattcaattttaaacataagtagaatggacatcttacaaaaaaagtaactgtgtta-----agtcttaattcagttcatcaaatttgctcac

upper sequence: AT3G50590.1 (Arabidopsis thaliana), 5'ss of exon 25
lower sequence: GLYMA01G39110.1 (Glycine max), 5'ss of exon 24
AGCATTCTTGGCTCTGGCTAAGGATCAATCGCGTGGTGCAGATATCAAAGCTCAAGCCACAATCTGTGCTCAGTACAAGATAGCTGTAACTCTCCTTCGGgta--actaactctcgtcgatctcccctgtaatgagt---ttagattctgctcaaacgatgagaccatcttatcaatgctttttttctcctctctcccatttgcag
| | ||  | ||  | ||||| || ||||| |||||    || || ||||||||||| |||||||||||||| ||||||||| | || ||||| |||| ||||  | ||     | || || ||   ||  |||  |    | || ||||  | | | |  | |  |    ||  |   | | ||||||    |    ||      
ATCTTTTCTTGCATTAGCTAAAGAACAATCTCGTGGAAGTGACATAAAAGCTCAAGCAACAATCTGTGCTCAATACAAGATAACGGTCACTCTTCTTCAGgtacaattactatgcttcaatttctaatgacatggatagaatggaatctgaccta-caagtaaattaggcaattgagcttctgtttctctaggccataatg-----

upper sequence: AT3G50590.1 (Arabidopsis thaliana), 5'ss of exon 25
lower sequence: GLYMA11G06140.1 (Glycine max), 5'ss of exon 5
AGCATTCTTGGCTCTGGCTAAGGATCAATCGCGTGGTGCAGATATCAAAGCTCAAGCCACAATCTGTGCTCAGTACAAGATAGCTGTAACTCTCCTTCGGgta--actaactctcgtcgatctcccctgtaatgagtttagattctgctcaaacgatgagaccatcttatcaatgctttttttctcctctctcccatttgcag
| | ||  | ||  | ||||| || ||||| |||||    ||||| |||||||||||  ||||||||||||| ||||||||| | || ||||| |||| ||||  | ||     | || || ||   || ||||| |                                                                  
ATCTTTTCTTGCATTAGCTAAAGAACAATCTCGTGGAAGTGATATAAAAGCTCAAGCATCAATCTGTGCTCAATACAAGATAACAGTCACTCTTCTTCAGgtactattactatgcttcaatttctaatggaatgaatag----------------------------------------------------------------