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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gcatgtaactgttgtttagtgtttcttttctgtagtatctgatttatgcctgactgattggattatctgacagCCATTTCATTTGGAGCTGAATTTCTTCAATAAGCCAAATAGAGTTCTTCATTATCCTGTGAGGTCCTTTTATATCGAGGGCCTTAACCTCATGGCTCACA

Basic information

species Arabidopsis thaliana
transcript AT3G50590.1
intron # 13
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT3G50590.1 (Arabidopsis thaliana), 3'ss of exon 13
lower sequence: GLYMA05G10590.1 (Glycine max), 3'ss of exon 12
-------gcatgtaac----tgttgtttagtgtttcttttctgtagtatctgatttatgcctgactgat-tggattatctgacagCCATTTCATTTGGAGCTGAATTTCTTCAATAAGCCAAATAGAGTTCTTCATTATCCTGTGAGGTCCTTTTATATCGAGGGCCTTAACCTCATGGCTCACA
        ||| | ||    |||| |  |   |||||||| |||  ||| |  | |       |||||      |||| || |||||||||||||||||||| |||||||| |||||  | || ||||||||||||||||| ||  || | |  ||||| || || || ||||| ||||| || |
gtatgattcatctgacaatttgttttgaaacatttctttt-tgttatattttctgttcaatcaactgacaccacttatgtgccagCCATTTCATTTGGAGCTAAATTTCTTTAATAAAGCGAACAGAGTTCTTCATTATCCAGTCCGGGCATACTATATGGATGGACTGAACCTTATGGCACATA

upper sequence: AT3G50590.1 (Arabidopsis thaliana), 3'ss of exon 13
lower sequence: GLYMA17G20310.1 (Glycine max), 3'ss of exon 12
----------gcatgtaactgttgtttagtgtttcttttctgtagtatctgat-ttatgcctgactgat-tggattatctgacagCCATTTCATTTGGAGCTGAATTTCTTCAATAAGCCAAATAGAGTTCTTCATTATCCTGTGAGGTCCTTTTATATCGAGGGCCTTAACCTCATGGCTCACA
           |  | || || | || |    ||  ||| |||  ||| |  | ||        ||||      |||| || |||||||||||||||||||| |||||||| |||||  ||||  |||||||||||||||| || ||| | |  ||||| || || || ||||| ||||| ||||
gtatgattcatctggcaattggttttgaaacatttctttttgttatattttctgtttcaatcatctgacaccacttatgtgccagCCATTTCATTTGGAGCTAAATTTCTTTAATAAAGCAAACCGAGTTCTTCATTATCCAGTCAGGGCATACTATATGGATGGACTGAACCTTATGGCACACA

upper sequence: AT3G50590.1 (Arabidopsis thaliana), 3'ss of exon 13
lower sequence: GLYMA01G39110.1 (Glycine max), 3'ss of exon 12
-----------------------gcatgtaactgttgtttagtgtttcttttctgtagtatctgatttatgcctgactgattggatt-at---ctgacagCCATTTCATTTGGAGCTGAATTTCTTCAATAAGCCAAATAGAGTTCTTCATTATCCTGTGAGGTCCTTTTATATCGAGGGCCTTAACCTCATGGCTCACA
                        ||| | | | |    | |  ||| |||||  |||    |  | |       ||  ||   ||| ||   ||  |||||||||||||||||||| ||||||||||||||    ||  |||||||||||||||| || ||| | || ||| | || || |  || || ||||| || |
gttatacaggcaagaatcctttgacatttgattttgagattg-atttattttccatagacatttttcttcaatcaaccaataccatttatgcactaccagCCATTTCATTTGGAGCTAAATTTCTTCAATAAAGAGAACCGAGTTCTTCATTATCCCGTCAGGGCTTTCTATGTGGATGGACCCAATCTTATGGCACATA

upper sequence: AT3G50590.1 (Arabidopsis thaliana), 3'ss of exon 13
lower sequence: Vv00s0379g00020.t01 (Vitis vinifera), 3'ss of exon 11
--------------------gcatgtaactgttgtttagtgtttcttttctgtagtatctgatttatgcctgac-tgattggattatctgacagCCATTTCATTTGGAGCTGAATTTCTTCAATAAGCCAAATAGAGTTCTTCATTATCCTGTGAGGTCCTTTTATATCGAGGGCCTTAACCTCATGGCTCACA
                       | | |||| |  || | ||| ||| |   |    |    ||| |   | |  ||||||  ||   || |||||||||||||||||||| |||||||||||||     ||| | || ||||||||||| || ||| |||||||| | || ||  ||||||| |||||  | |
gtaactatttaatttctgttaattatgactgatactttgggttgcttgtgcttttgcttgagtttgtttttaatgtgattgacttcattggcagCCATTTCATTTGGAGCTAAATTTCTTCAATAGAGAGAATCGTGTGCTTCATTATCCAGTCAGGGCCTTTTATGTGGATGGTGTTAACCTTATGGCATATA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gtgtttcttttctgtagtatctgatttatgcctgactgattggattatctgacagCCATTTCATTTGGAGCTGAATTTCTTCAATAAGCCAAATAGAGTTCTTCATTATCCTGTGAGGTCCTTTTATATCGAGGGCCTTAACCTCATGGCTCACA
                                 gactgat  putative branch site (score: 3)
                     tgatttat  TA-rich tract